Pairwise Alignments

Query, 818 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 837 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq) from Shewanella loihica PV-4

 Score =  180 bits (456), Expect = 3e-49
 Identities = 144/547 (26%), Positives = 253/547 (46%), Gaps = 22/547 (4%)

Query: 131 LFDNDHHGVVITDDQTRILACNRYFEQQTGYQQNELLGLKTSMFNSGKHSQHFYVDMWQQ 190
           +F+N   GVVITD    I+  +  F + TGY ++E+LG    + NSG+H + F+  +W+ 
Sbjct: 293 IFENSVEGVVITDASGNIIEVHGAFTEITGYSRDEVLGENPRILNSGRHDKAFFERLWRS 352

Query: 191 LREQGGWSGTILSQRASGEVWPQDLSIKRLSPQKGQI-FYIGFTTDLAPHLDRVLDKQAG 249
           L   G W G I ++R SG ++P+ L+I  +     Q+ +++    D++    +  +K+  
Sbjct: 353 LLTNGKWHGEIWNRRKSGAIYPEQLTISSMYGDDHQVRYFVAVFADISAQ--KQSEKELA 410

Query: 250 DV---ELLTQLPTLSKFSDQLKQRL---PKQQTTTGFVLAIQPKFS--SDKY-YAQIRRL 300
            +   + LT+LP     S  L+Q L    +++T    +      F   +D Y +     +
Sbjct: 411 RLVYHDPLTKLPNRMMLSANLEQELRHAAREETELALIFIDVDLFKHINDSYGHVTGDAI 470

Query: 301 AASLAQNRQVQLCGYHGEGIFLCQLDAEKNLEAQPLVGLQRTLRQFFIELRQRGG----- 355
              +A+    +L    GE   L +L +++ +   P V    ++      LR+        
Sbjct: 471 LVEVARRLGQKL----GEEATLARLGSDEFIAVLPHVESDDSVSLMVSRLREAFDAPFLL 526

Query: 356 QEAHQAVAKGRLGVSVLNVDTDKIERLVPHAIQAMLEHHAGETRHINFYDRAIHQQIERR 415
            +         +GV++   D +  + L+ +A  AM    A    +  FY +++       
Sbjct: 527 DDEGSVRLTASMGVAIYPGDGESGDTLLRNADTAMHRAKANGRNNYAFYTQSLTLASVEH 586

Query: 416 KTLEKWVQKWIANGDVEVFYQPIVDSQSWSVVKFEALCRFQAPELLHASTQELISIAEDL 475
             L+  +   I      + YQP +   +   V FEAL R++ P+L   S    I +AE++
Sbjct: 587 LKLQSALHDAINKDAFYLVYQPKLALGTGQCVGFEALLRWEDPQLGTISPAIFIPVAENI 646

Query: 476 GLINQLDELIGGKALKDLPKIHALFGHHVGVSINRSLNSDLSAEQILQSVVDMLAETPTL 535
           GLIN++   +  +A     +  A       +S+N +    L  +Q    V  +L E    
Sbjct: 647 GLINEIGLWVLKQAATQGAQWLAEGKRFGRISVNVA-GPQLQQKQFCAQVKRVLDEAGLP 705

Query: 536 AKNITVELTETAYFDSQSQGGEVLQHLRNRGVTVAIDDFGTGFSSFSYLTECQFDYLKID 595
            + + +E+TE+          EVL+ L   GV +++DDFGTG+SS +YL       LKID
Sbjct: 706 PEYLELEVTESCMMSDPLAVIEVLKQLGELGVELSVDDFGTGYSSLNYLKRLPIHKLKID 765

Query: 596 REFVTNIEVGSRRYAIVKMVTDLAHTLGVKVVAEGVETEHEVYVLKSLGVDLLQGFFFAK 655
           + F+ +I       AI K V  L H L + ++AEGVET  +   L++ G D  QG+ ++K
Sbjct: 766 QSFIRDIPRDGNNTAIAKAVIALGHALNLCIIAEGVETPEQAAFLEAAGCDQAQGYLYSK 825

Query: 656 PLPLSNL 662
           P  +  L
Sbjct: 826 PRMVEEL 832