Pairwise Alignments

Query, 818 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1094 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq) from Shewanella loihica PV-4

 Score =  209 bits (531), Expect = 9e-58
 Identities = 157/557 (28%), Positives = 269/557 (48%), Gaps = 39/557 (7%)

Query: 130  ALFDNDHHGVVITDDQTRILACNRYFEQQTGYQQNELLGLKTSMFNSGKHSQHFYVDMWQ 189
            A+F+    G+V+TD    I A N  F Q TGY   E+ G   ++ NS +   HFY  MWQ
Sbjct: 537  AVFEYCAEGIVVTDKDNLIEAVNPAFTQITGYTLEEVKGRSPAVLNSHQQPHHFYEQMWQ 596

Query: 190  QLREQGGWSGTILSQRASGEVWPQDLSIKRLSPQKGQIF-YIGFTTDLAPHLDRVLDK-Q 247
             L++ G W G I ++R +G+++P+ L+I  +   KG++  +IG   D++       D   
Sbjct: 597  SLKQYGKWQGEIWNKRKNGQIFPEYLAITVVKDDKGRVVQHIGLFLDISNRKKYEQDIWY 656

Query: 248  AGDVELLTQLPTLSKFSDQLKQ--RLPKQQTTTGFVLAIQP---KFSSDKYYAQIRRLAA 302
              + + LT LP    ++ +L Q  +L +Q+  +  VL I     K+ +D Y   +     
Sbjct: 657  KSNYDALTNLPNRQLYTSRLSQMLQLAEQRCCSVAVLFIDLDRFKYINDIYGHAVGDELL 716

Query: 303  SLAQNRQVQLCGYHGEGIFLCQLDAEKNLEAQPLVGLQRTLRQFFIELRQRG-------- 354
             +A  R   L   H    F+ +L  ++ +     V +  T  Q  IE R +         
Sbjct: 717  QVAAARLEALLEQHD---FVARLSGDEFV-----VVMGHTKHQGEIEQRAQNILQHLSSP 768

Query: 355  -GQEAHQAVAKGRLGVSVLNVDTDKIERLVPHAIQAMLEHHAGETRHINFYDRAIHQQIE 413
             G   ++ +    +G+S    +   +E L  +A  AM +          ++   ++  + 
Sbjct: 769  FGINRNELLISASVGISCYPSNGTSVEVLTRNAETAMYQAKQDGRNCFGYFSPDMNNNML 828

Query: 414  RRKTLEKWVQKWIANGDVEVFYQPIVDSQSWSVVKFEALCRFQAPELLHASTQELISIAE 473
             R TLE+ ++  +   +  + YQPIVD+ S   V  EAL R++ P+       E I IAE
Sbjct: 829  ARITLEQSLRSAVLQHEFCLHYQPIVDTSSGEGVALEALLRWRHPQRGLVPPDEFIPIAE 888

Query: 474  DLGLINQLDELIGGKALKDLPKIHALFGHHVGVSINRSLNSDLSAEQILQS--------V 525
            + GLI  + E +  +AL+DL + H+      G+ IN ++N  +S  Q+           +
Sbjct: 889  ETGLIEPIGEWVIQQALRDLRQCHSQ-----GIMINMAIN--VSGRQLAHGDPSHFACML 941

Query: 526  VDMLAETPTLAKNITVELTETAYFDSQSQGGEVLQHLRNRGVTVAIDDFGTGFSSFSYLT 585
              +L +     + + +E+TE+          + L  +R+ GV + +DDFGTG+SS SYL 
Sbjct: 942  NGLLQKYDVAPQYVHIEITESILMADTELSLKALTAIRHLGVEIYLDDFGTGYSSLSYLK 1001

Query: 586  ECQFDYLKIDREFVTNIEVGSRRYAIVKMVTDLAHTLGVKVVAEGVETEHEVYVLKSLGV 645
            +     +KID+ FV N+        ++K +  +  +L +++VAEGVE+E +   L+ LG 
Sbjct: 1002 QFPISVIKIDKSFVDNMLEDRADANLIKAIITMGQSLDMRLVAEGVESEPQRSFLQGLGC 1061

Query: 646  DLLQGFFFAKPLPLSNL 662
            D +QG+  AKP+PL  L
Sbjct: 1062 DFVQGYLVAKPMPLKEL 1078