Pairwise Alignments

Query, 818 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 998 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  193 bits (491), Expect = 4e-53
 Identities = 151/569 (26%), Positives = 254/569 (44%), Gaps = 37/569 (6%)

Query: 122 MESAFAFDAL-FDNDHHGVVITDDQTRILACNRYFEQQTGYQQNELLGLKTSMFNSGKHS 180
           +E +    AL +DN    + + D+   I+  N  F   TGY ++E+ G    M     + 
Sbjct: 442 IEESLKLSALVYDNSSEAMSVLDENGVIITVNAAFTDITGYSESEIRGQHIRMMYCDLNG 501

Query: 181 QHFYVDMWQQLREQGGWSGTILSQRASGEVWPQDLSIKRLSPQKG----QIFYIGFTTDL 236
             FY  M   +R +G W G +  +R + E +   L+I  +  + G    ++      TD 
Sbjct: 502 HEFYQQMNDDIRNKGEWQGEMRQRRRNNEEYVIWLTINTIKDKDGLPHRRVALFSDITD- 560

Query: 237 APHLDRVLDKQAGDVELLTQLPTLSKFSDQLKQRLPKQQTTTGFVLAIQPKFSSDKYYAQ 296
               + ++ KQA + + LT LP      + L   +            +   F    Y+ +
Sbjct: 561 KKQSEHLIWKQA-NYDTLTGLPNRRMLLEYLSAEIKTADRNRNHFALM---FLDLDYFKE 616

Query: 297 IR-----------------RLAASLAQNRQVQLCGYHGEGIFLCQLDAEKNLEAQPLVGL 339
           +                  RL + +     V   G     + L  +   K +E      L
Sbjct: 617 VNDTLGHAMGDLLLIETASRLKSCVRDADVVARLGGDEFTVVLSSMADHKGIERVAEHIL 676

Query: 340 QRTLRQFFIELRQRGGQEAHQAVAKGRLGVSVLNVDTDKIERLVPHAIQAMLEHHAGETR 399
           +R    +++      G+E     A   +G+++   D+  IE L+ HA QAM         
Sbjct: 677 RRIAEPYYL------GEETTHISAS--IGITLYPDDSPSIEGLLKHADQAMYAAKDQGRN 728

Query: 400 HINFYDRAIHQQIERRKTLEKWVQKWIANGDVEVFYQPIVDSQSWSVVKFEALCRFQAPE 459
             N++  ++ +  + R  L   +++ + N + E+ YQPIV   +  V+K EAL R+  PE
Sbjct: 729 RFNYFTPSMQEYAKYRMRLIHDLRQAVLNKEFELHYQPIVTMATGEVLKAEALLRWFHPE 788

Query: 460 LLHASTQELISIAEDLGLINQLDELIGGKALKDLPKIHALFGHHVGVSINRSLNSDLSAE 519
               S  E I +AED GLI ++   +  +A +   +     G  + +S+N+S        
Sbjct: 789 RGSVSPAEFIPVAEDTGLIVEIGNWVFEQAARQSAQWRKTLGVEIQISVNKSPIQFRDEG 848

Query: 520 QILQSVVDMLAETPTLAKNITVELTETAYFDSQSQGGEVLQHLRNRGVTVAIDDFGTGFS 579
            +L + +++L +       + VE+TE    D+     E L   R+ GV V++DDFGTG+S
Sbjct: 849 ALLHNWLELLQQLDVTGAGVCVEITEGLLLDASMGVTEKLLAYRDAGVQVSLDDFGTGYS 908

Query: 580 SFSYLTECQFDYLKIDREFVTNIEVGSRRYAIVKMVTDLAHTLGVKVVAEGVETEHEVYV 639
           S +YL +   DYLKID+ F  NI+     + + + +  +AH LG+KV+AEGVETE +  V
Sbjct: 909 SLAYLKKFDIDYLKIDQSFTRNIDTDENDHTLCEAIIVMAHKLGMKVIAEGVETEAQRQV 968

Query: 640 LKSLGVDLLQGFFFAKPLPLSNLIHASDY 668
           L   G D  QG+ F+KP+  S    AS Y
Sbjct: 969 LLRAGCDYGQGYLFSKPVSASEF--ASKY 995