Pairwise Alignments

Query, 818 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1077 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  210 bits (534), Expect = 4e-58
 Identities = 147/544 (27%), Positives = 258/544 (47%), Gaps = 17/544 (3%)

Query: 130  ALFDNDHHGVVITDDQTRILACNRYFEQQTGYQQNELLGLKTSMFNSGKHSQHFYVDMWQ 189
            A+F+    G+++TD    I   N  F Q TGY   ++ G   SM +S +H  HFY  MW+
Sbjct: 512  AVFNYSAEGIMVTDADNHIELVNPAFSQITGYSLEDVKGRSPSMLSSKRHPSHFYTAMWE 571

Query: 190  QLREQGGWSGTILSQRASGEVWPQDLSIKRLSPQKGQIF-YIGFTTDLAPHLDRVLDK-Q 247
             L++   W G I ++R  G+V+P+ L+I  +  ++G+I  +IG   D++       D   
Sbjct: 572  ALQKDSKWEGEIWNKRKDGQVYPEYLAITVVRNERGEIIQHIGLFMDISKRKQYEQDLWY 631

Query: 248  AGDVELLTQLPTLSKFSDQLKQRLPKQQTTTGFVLAIQPKFSSDKYYAQIRRLAAS--LA 305
                + LT LP    F+++L+  +   Q  +  +  +       KY   ++  A    L 
Sbjct: 632  QAHFDTLTGLPNRKLFNERLQHEIQLAQHDSRKLAILLIDLDQFKYINDVQGHATGDLLL 691

Query: 306  QNRQVQLCGYHGEGIFLCQLDAEKNLEAQPLV----GLQRTLRQFFIELRQRGGQEAHQA 361
            Q+   +L    G+   + ++  ++ +   P V     ++    +    L         + 
Sbjct: 692  QDVAKRLENIAGKNDLIARIGGDEFVLILPRVTNEFAIEHMASRIIETLSTPFNLNEREI 751

Query: 362  VAKGRLGVSVLNVDTDKIERLVPHAIQAMLEHHAGETRHINFYDRAIHQQIERRKTLEKW 421
                  G+ V   D   +  L  +   AM +       +  ++   ++Q +  R  LE+ 
Sbjct: 752  QISASFGIGVYPEDGLDVSSLTRNTEMAMYQAKDAGRNNFKYFTSGMNQAMFARMELEQR 811

Query: 422  VQKWIANGDVEVFYQPIVDSQSWSVVKFEALCRFQAPELLHASTQELISIAEDLGLINQL 481
            +++ +A  +  + YQPIV+ ++  V   EAL R+Q P+L      + I IAE+ GLI  +
Sbjct: 812  LRRAVAQDEFTLHYQPIVEMKTGKVCSVEALIRWQDPDLGLIPPDQFIGIAEETGLIEPM 871

Query: 482  DELIGGKALKDLPKIHALFGHHVGVSINRSLNSDLSA-----EQILQSVVDMLAETPTLA 536
             E +  +A+ DL +   L G  + V+IN S    ++A     +Q+LQ   +     P   
Sbjct: 872  GEWVLNQAMHDLRQWQQL-GLQLNVAINVSSRQCVNARGMGFDQVLQECFNRHHINP--- 927

Query: 537  KNITVELTETAYFDSQSQGGEVLQHLRNRGVTVAIDDFGTGFSSFSYLTECQFDYLKIDR 596
            +N+ +E+TE+      S     L+ +R  G  + IDDFGTG+SS SYL +     +KIDR
Sbjct: 928  RNVHIEITESMLMGDASHCLSTLEAIRRLGSQIYIDDFGTGYSSLSYLKKFPISVIKIDR 987

Query: 597  EFVTNIEVGSRRYAIVKMVTDLAHTLGVKVVAEGVETEHEVYVLKSLGVDLLQGFFFAKP 656
             FV N    +    +VK +  +  +L +++VAEG+ETE +  +L+ LG    QG+  +KP
Sbjct: 988  SFVENALSNNSNTNLVKAIVMMGQSLEMELVAEGIETEAQWNLLRDLGCHYAQGYLISKP 1047

Query: 657  LPLS 660
            LP +
Sbjct: 1048 LPFA 1051