Pairwise Alignments

Query, 818 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1072 a.a., sensory box/GGDEF domain/EAL domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  178 bits (451), Expect = 2e-48
 Identities = 158/564 (28%), Positives = 260/564 (46%), Gaps = 59/564 (10%)

Query: 128  FDALFDNDHHGVVITDDQTRILACNRYFEQQTGYQQNELLGLKTSMFNSGKHSQHFYVDM 187
            F+ +F N   G++ITD    ILA N  F   TG+ + + +G    +  S +H + FY  +
Sbjct: 507  FELVFRNALEGILITDASGAILAVNPAFTTITGWNERDAVGRNPRILKSNRHDRGFYERL 566

Query: 188  WQQLREQGGWSGTILSQRASGEVWPQDLSIKRLSPQKGQIFYIGFTTDLAPHLDRVLDKQ 247
            W  L E+G W G I ++R +GE +P+ LSI  +  + G       TT+       + D +
Sbjct: 567  WHSLHERGAWEGEIWNRRINGENYPEWLSISAIRDESGA------TTNYVALFHDISDLK 620

Query: 248  AGDVEL--------LTQLPTLSKFSDQLKQRLPKQQTT---TGFVLAIQPKFSS------ 290
            A + ++        LT LP  +   ++L   L + Q T    G +      F +      
Sbjct: 621  AKEAQIRYQGMHDALTGLPNRALLLERLAGELKEGQGTGRLCGLLYIDIDNFKTINDSLG 680

Query: 291  ----DKYYAQIRRLAASLAQNRQVQLCGYHGEGIFLCQLDAEKNLEAQPLVGLQRTLRQF 346
                DK+ A++      L +     L    G+   +  L A    E + ++  +R L  F
Sbjct: 681  HEAGDKFIAEVAEHLTLLIRPEDT-LSRLGGDEYVI--LVANPGEEREVVLVAERILHHF 737

Query: 347  F--IELRQRGGQEAHQAVAKGRLGVSVLNVDTDKIERLVPHAIQAMLEHHAGETRHINFY 404
               I L  R   E H  ++   +G+++   D    + L+ +A  AM    A        +
Sbjct: 738  SQPIALLDR---ELHVGLS---IGIAIHPADGKGPDELLTNADLAMYRAKAQGKNTYERF 791

Query: 405  DRAIHQQIERRKTLEKWVQKWIANGDVEVFYQPIVDSQSWSVVKFEALCRFQAPELLHAS 464
               +H +I  R  LE  ++  + +G++   +QP VD  +  +V  EAL R+  P+    S
Sbjct: 792  SPHLHDRIRSRMELEGRLRHALRHGEIVPHFQPRVDLATGRIVGAEALARWTLPDGTRIS 851

Query: 465  TQELISIAEDLGLINQLDE------LIGGKALKD--LPKIHALFGHHVGVSINRSLNSDL 516
              E I +AEDLGLI  L E      L   +AL D  LP I       V +S+ +  ++DL
Sbjct: 852  PGEFIPVAEDLGLIFDLGEHMLRSSLAFTRALMDEGLPDITMA----VNLSLVQCRHADL 907

Query: 517  SAEQILQSVVDMLAETPTLAKNITVELTETAYFDSQSQGGEVLQHLRNRGVTVAIDDFGT 576
                    V+  L +T    + + +E+TE+A     ++    L  L   G+T+A+DDFGT
Sbjct: 908  VGR-----VLAALRDTGVPPERLELEITESAIMSDVTRTLRRLDRLAALGITLAVDDFGT 962

Query: 577  GFSSFSYLTECQFDYLKIDREFVTNIE--VGSRRYAIVKMVTDLAHTLGVKVVAEGVETE 634
            G+SS  +L       LKID+ FV ++    GSR  A+  +   +A  L + V+AEGVET 
Sbjct: 963  GYSSLYHLKHMPLHTLKIDQSFVRDLPHVAGSRTIALTMLA--MARNLDLDVIAEGVETG 1020

Query: 635  HEVYVLKSLGVDLLQGFFFAKPLP 658
             +++ L+  G  ++QGF F+  +P
Sbjct: 1021 AQMHFLRDHGCRVVQGFLFSPAVP 1044



 Score = 35.8 bits (81), Expect = 1e-05
 Identities = 19/47 (40%), Positives = 26/47 (55%)

Query: 124 SAFAFDALFDNDHHGVVITDDQTRILACNRYFEQQTGYQQNELLGLK 170
           S+  F ALFD    G+++  D   +L CNR  E   G  ++ELL LK
Sbjct: 390 SSTRFRALFDYAPDGLLLQRDDGTLLDCNRMAEATLGLSRHELLALK 436