Pairwise Alignments

Query, 818 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1228 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) (RefSeq) from Shewanella sp. ANA-3

 Score =  196 bits (498), Expect = 7e-54
 Identities = 156/594 (26%), Positives = 274/594 (46%), Gaps = 42/594 (7%)

Query: 82   LNTLLVSAEKLVALVAFSVDEVSSQLVRGTITPLLIFHSGMESAFAFDALFDNDHHGVVI 141
            LN  LV+A     L+ F V++++ Q        LL              +F     G+ I
Sbjct: 646  LNGSLVTAANGEQLILFIVEDITEQERTVARVNLLA------------QVFQQSGEGITI 693

Query: 142  TDDQTRILACNRYFEQQTGYQQNELLGLKTSMFNSGKHSQHFYVDMWQQLREQGGWSGTI 201
             D    I+  N  F Q TGY ++E++G       + +  +     +   L + G W G +
Sbjct: 694  MDANDIIVDVNSAFTQITGYSRDEIIGKNCRFLEAERTDRSIDAQVRAALEQTGFWQGEV 753

Query: 202  LSQRASGEVWPQDLSIKRLSPQKGQI-FYIGFTTDLAPHLDRVLDKQ----AGDVELLTQ 256
              +   G  +P+ L +  +  + G I  YIG  TD++   +R ++++        + LT 
Sbjct: 754  WDRHKEGFDFPKWLMMSIVRDETGAISHYIGSFTDIS---ERKVNEERIHFLAHHDSLTL 810

Query: 257  LPTLSKFSDQLKQRLPK---QQTTTGFVLAIQPKFSS----------DKYYAQIRRLAAS 303
            LP       +L++   +    QT    +      F +          D    ++ R   +
Sbjct: 811  LPNRLSLQSRLEKVFQEAFISQTQIAVMFIDMDHFKNINDTLGHHVGDMLLLEVARRLKN 870

Query: 304  LAQNRQVQLCGYHGEGIFLCQLDAEKNLEAQPLVGLQRTLRQFFIELRQRGGQEAHQAVA 363
            +  N  + +    G+   +   D + +  A+    L+  L Q ++       +  H + +
Sbjct: 871  IMGNDDI-VARLGGDEFVVVLSDTDHDRVAKVAEALRSGLNQTYL----IDNKPLHSSPS 925

Query: 364  KGRLGVSVLNVDTDKIERLVPHAIQAMLEHHAGETRHINFYDRAIHQQIERRKTLEKWVQ 423
               +G+S+   D D +E L+ +A  AM    A    +  F+  A++  +  R+ +E  ++
Sbjct: 926  ---IGISLFPTDGDSVEALMKNADMAMYRAKAAGRNNYQFFTAAMNTLVTERQQIETGLR 982

Query: 424  KWIANGDVEVFYQPIVDSQSWSVVKFEALCRFQAPELLHASTQELISIAEDLGLINQLDE 483
            + IA  ++ ++YQP VD  S  VV  EAL R+Q PEL   +    I IAE++ +I  + +
Sbjct: 983  QAIACNELLLYYQPQVDISSGQVVGVEALIRWQHPELGLVAPDRFIPIAEEIDMIIPIGQ 1042

Query: 484  LIGGKALKDLPKIHALFGHHVGVSINRSLNSDLSAEQILQSVVDMLAETPTLAKNITVEL 543
             +   AL  L +        + +++N S +  L  + I+  ++++L +       + +E+
Sbjct: 1043 WVLENALAQLAEWRDKGAKGLRMAVNLSAH-QLRKDTIVADIINVLTKHKLGKGALELEI 1101

Query: 544  TETAYFDSQSQGGEVLQHLRNRGVTVAIDDFGTGFSSFSYLTECQFDYLKIDREFVTNIE 603
            TE+       Q  ++L  LR  G+ +AIDDFGTG+SS SYL     D LK+DR FV +IE
Sbjct: 1102 TESVAMQYPEQNAKLLAELRQHGIELAIDDFGTGYSSLSYLKLLPLDRLKLDRSFVKDIE 1161

Query: 604  VGSRRYAIVKMVTDLAHTLGVKVVAEGVETEHEVYVLKSLGVDLLQGFFFAKPL 657
                  AI      +AH LG+ VVAEGVE E ++ +L  +G DL+QG++F+KPL
Sbjct: 1162 SDPNDAAISAATISMAHELGLTVVAEGVENEAQLVLLSGMGCDLVQGYYFSKPL 1215