Pairwise Alignments

Query, 331 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 334 a.a., peptide ABC transporter substrate-binding protein from Herbaspirillum seropedicae SmR1

 Score =  207 bits (528), Expect = 2e-58
 Identities = 112/307 (36%), Positives = 181/307 (58%), Gaps = 6/307 (1%)

Query: 3   LLDIRHLTIEIDTPQGLVKAVDRMSLTMNEGEIRGLVGESGSGKSLVAKAIVGICKENWR 62
           LLD+++L +++ T  G++ AV  +   +  GE+  LVGESG GKS+ + A++G+     +
Sbjct: 4   LLDVKNLKVDLPTENGMLHAVRGIDFQVRRGEMLCLVGESGCGKSMTSLALMGLLPRKAQ 63

Query: 63  VTADRMRLGNIDLLQLTPRERRRVIARDVAMIFQEPSTCLDPSEEVGRQLIESIPFRTFE 122
            +AD +    +DL  +  ++  ++  + +AMIFQEP T L+PS  +G QL E++  +   
Sbjct: 64  CSADHILFDGVDLHGMPDKQLMQLRGKRMAMIFQEPMTSLNPSYTLGNQLCEAMLQQPGV 123

Query: 123 GRWWERFTWRKKQAIALLHKVGIKDHKDIMSSYPYELTDGECQKVMIAMAIAAKPKLLIA 182
            R   R     ++A+ LLH+ GI + +D +  YP++L+ G  Q+VMIAM++   P L+IA
Sbjct: 124 SRAEAR-----ERALYLLHRTGISNAEDRLRQYPHQLSGGLRQRVMIAMSLMCNPDLIIA 178

Query: 183 DEPTNDVDPITQSQILRLLSRMNQVNNTSILLIGHDLTTITQWADRITVMYCGQSVESAE 242
           DEPT  +D   Q+QILR++  + Q    +++ I HDL  +++ ADR+ VMY GQ VE+ +
Sbjct: 179 DEPTTALDVTIQAQILRMIRELQQEFGAAVIFITHDLGVVSRIADRVAVMYAGQVVETTD 238

Query: 243 TAKIVAEPKHPYTAALLKAMPDFSDWIPHKQKLQSLPGSIPPLQHLPIGCRLGPRCPYAQ 302
            A++ A+P+HPYT  LL  +P     +P    LQ++PG +P L     GC    RC  A 
Sbjct: 239 VAQLFAQPRHPYTQGLLNCIPVRGKTLPGSH-LQAIPGVVPSLVGQVSGCAFRNRCAKAD 297

Query: 303 RQCVEVP 309
             C   P
Sbjct: 298 SGCERDP 304