Pairwise Alignments

Query, 295 a.a., peptide ABC transporter permease SapC from Vibrio cholerae E7946 ATCC 55056

Subject, 310 a.a., Binding-protein-dependent transport systems inner membrane component (NCBI) from Rhodospirillum rubrum S1H

 Score =  172 bits (436), Expect = 9e-48
 Identities = 107/295 (36%), Positives = 153/295 (51%), Gaps = 12/295 (4%)

Query: 1   MLSDSIYQEEHIPTQFERF---WRSFRANNLAMFGLWSLLFIALVTILSPWIAPYDPQMH 57
           +LSDS      +  +  RF   W  F  N LA+ GL   L + ++   +PWIAP+DP   
Sbjct: 20  LLSDS--PASRLQARLGRFYSGWLVFIRNPLAVIGLAIFLCLVILATFAPWIAPHDPLFG 77

Query: 58  S-SVLLLPPSWEPEGTVDYFLGTDDLGRDILSRLIDGSLFSIGAAVLITLIATLVGGTIG 116
           + S  LLPPS        ++LGTD  GRDI SR++ GS  ++    L+ + A  VG  IG
Sbjct: 78  TLSERLLPPS------AGHWLGTDQQGRDIWSRIVFGSRTTLMIIFLVAITAAPVGLLIG 131

Query: 117 ALAGMTKGLLSSTLNHILDTVMSIPSLLLAIIFVAFLGAGEFNILLAIGLALIPRFIRSV 176
             AG   G++ + L  + D  ++ P L+LA+ F A LGAG  N +LAI L   P + R  
Sbjct: 132 TTAGFVGGIVEAALMRLTDAFLAFPKLILALAFAAALGAGLENAVLAIALTAWPPYARIA 191

Query: 177 YVAVHNEVEKDYVMAARLDGANEFYLLWHSIFPNILPIIVAEITMALSIAILDITALGFL 236
                     D+V AAR+ G++   +L   I P  +P +V  +++ ++  IL    LGFL
Sbjct: 192 RAETLAVRRTDFVAAARMCGSSPLRILIGQIMPMCIPSLVVRVSLDMAGVILIAAGLGFL 251

Query: 237 GLGAQSPSTEWGAMLGDSVELIYIAPWTVTLPGLAIMFTVVVINLVGDGARQALN 291
           GLG   P  EWGAM+ +    I    W  T PG+AI    +  NL+GDG R  L+
Sbjct: 252 GLGVAPPQPEWGAMVSEGRSQILAQWWVCTYPGIAICIVSLGFNLLGDGLRDVLD 306