Pairwise Alignments

Query, 295 a.a., peptide ABC transporter permease SapC from Vibrio cholerae E7946 ATCC 55056

Subject, 296 a.a., binding-protein-dependent transport systems inner membrane component (RefSeq) from Shewanella loihica PV-4

 Score =  316 bits (809), Expect = 5e-91
 Identities = 151/287 (52%), Positives = 208/287 (72%), Gaps = 1/287 (0%)

Query: 6   IYQEEHIPTQFERFWRSFRANNLAMFGLWSLLFIALVTILSPWIAPYDPQMHSSV-LLLP 64
           IYQE+HIP+   R W +F  N  A  GLW++  + L+ +  P IAPY P+    + LLL 
Sbjct: 6   IYQEDHIPSPLSRIWSAFTDNPFAFAGLWAVCCLLLLALFGPLIAPYSPEHQDPLALLLA 65

Query: 65  PSWEPEGTVDYFLGTDDLGRDILSRLIDGSLFSIGAAVLITLIATLVGGTIGALAGMTKG 124
           PSWEP GTV++FLGTDDLGRDI SRL+ G+  + G A+ I + A L+G  IG+++GM KG
Sbjct: 66  PSWEPTGTVEHFLGTDDLGRDIFSRLLHGAHLTFGMALAIVITALLLGFIIGSISGMMKG 125

Query: 125 LLSSTLNHILDTVMSIPSLLLAIIFVAFLGAGEFNILLAIGLALIPRFIRSVYVAVHNEV 184
           L SS L+H+LD ++SIPSLL+AI+ VA  G G  N+  A+G+AL P+F+R+++ AVH E+
Sbjct: 126 LKSSILSHLLDALLSIPSLLMAILVVAVTGPGLGNVFWAVGIALTPQFVRAIHQAVHEEL 185

Query: 185 EKDYVMAARLDGANEFYLLWHSIFPNILPIIVAEITMALSIAILDITALGFLGLGAQSPS 244
           +K+YV AARLDGAN   + W+ I PNI+  ++ + T+ +S AILDI ALGFL LGAQ+PS
Sbjct: 186 QKEYVTAARLDGANSLQIFWYVILPNIMDTMIIQTTLGISAAILDIAALGFLNLGAQAPS 245

Query: 245 TEWGAMLGDSVELIYIAPWTVTLPGLAIMFTVVVINLVGDGARQALN 291
            EWGAM+   ++ +  APWTVT+PG+AI+ +V+ INLVGDG R AL+
Sbjct: 246 PEWGAMVSQGLDNLLTAPWTVTIPGVAILCSVLAINLVGDGLRSALS 292