Pairwise Alignments

Query, 320 a.a., antimicrobial peptide ABC transporter permease SapB from Vibrio cholerae E7946 ATCC 55056

Subject, 336 a.a., Dipeptide transport system permease protein DppB (TC 3.A.1.5.2) from Pseudomonas fluorescens FW300-N2E2

 Score =  207 bits (527), Expect = 3e-58
 Identities = 113/338 (33%), Positives = 189/338 (55%), Gaps = 26/338 (7%)

Query: 1   MFVYTVRKFNLFIITLLILTMVGYSLARFDPHSPWTLI---------------------- 38
           MF +  R+  L I T   +T++ ++L R  P  P  ++                      
Sbjct: 1   MFSFIARRLGLLIPTFFGITLLTFALIRMIPGDPVEVMMGERRVDPEMHAQAMERLGLNK 60

Query: 39  GFWQGWSSYLVQLMEFNFGLN-KNGVPILHELLVVFPATIELCTIAFILSLLVGIPIGTL 97
             +  +  Y+ +L + + G + +    +  E   +FPAT+EL   A + + ++G+  G +
Sbjct: 61  PLYAQYLDYIGKLAQGDLGESLRTRESVWTEFSSLFPATLELSMAALLFAGILGLLAGVI 120

Query: 98  AGMRQGKWLDTIISFISMSGYSAPIFWLALMMIMAFSLHFPVFPVAGRYDLLYQIDHVTG 157
           A +++G   D  +  +S++GYS PIFW  L++IM FS+     PV+GR DLLY I+  TG
Sbjct: 121 AALKRGSLFDHGVMGVSLAGYSMPIFWWGLILIMFFSVSLGWTPVSGRIDLLYDIEPKTG 180

Query: 158 FALIDAFLSQSPYRSQALQSVIEHLTLPCLVLALAPTTQVIGQMRASVAEVMNQNYIRAA 217
           F LID  L+  P    A    + HL LP +VL   P   +    R+S+ EV+ ++YIR A
Sbjct: 181 FMLIDTLLADEP---GAFLDALHHLILPAIVLGTIPLAVIARMTRSSMLEVLREDYIRTA 237

Query: 218 KIKGLSNYQIVTQHVLRNAIPPMIPKFGVQLSSMLTLAIITESIFNWPGIGRWLLDALAN 277
           K KGLS  ++V  H LRNA+ P++   G+Q+ ++L  A++TE+IF+WPGIG+WL++A+  
Sbjct: 238 KAKGLSPSRVVFVHGLRNALIPVLTVVGLQVGTLLAGAVLTETIFSWPGIGKWLIEAIGA 297

Query: 278 RDFMSIQAGVIVVGTLVLTANILSDLIGAAANPLVRKE 315
           RD+  +Q G++++  LV+  N + D++   ANP +R +
Sbjct: 298 RDYPVVQNGILLIACLVILVNFVVDILYGFANPRIRHQ 335