Pairwise Alignments

Query, 320 a.a., antimicrobial peptide ABC transporter permease SapB from Vibrio cholerae E7946 ATCC 55056

Subject, 345 a.a., Dipeptide transport system permease protein DppB (TC 3.A.1.5.2) from Pseudomonas fluorescens FW300-N2E2

 Score =  153 bits (386), Expect = 7e-42
 Identities = 86/276 (31%), Positives = 145/276 (52%), Gaps = 6/276 (2%)

Query: 41  WQGWSSYLVQLMEFNFGLNK-NGVPILHELLVVFPATIELCTIAFILSLLVGIPIGTLAG 99
           W  ++ YL  L+  +FG+    G P++ ++  VFPAT+EL T+A +  +L G+P+G  A 
Sbjct: 73  WTQFAIYLGDLLHGDFGMALLTGNPVITDIARVFPATLELATLAILFGVLAGLPLGVYAA 132

Query: 100 MRQGKWLDTIISFISMSGYSAPIFWLALMMIMAFSLHFPVFPVAGRYDLLYQ--IDHVTG 157
             QG+  D +   I++ GYS PIFW+ +M  + F          GR  L Y   I   TG
Sbjct: 133 THQGRAGDHVARLITLFGYSTPIFWIGMMAFLVFYAWLGWAGGVGRIGLAYDGLIPKHTG 192

Query: 158 FALIDAFLSQSPYRSQALQSVIEHLTLPCLVLALAPTTQVIGQMRASVAEVMNQNYIRAA 217
             LID   S      +A +S + H+ LP ++L+      +    R+ + E ++Q YI  A
Sbjct: 193 LLLIDTAWSGD---WEAFRSALRHILLPAVILSFNSVAYISRMTRSFMLEQLSQEYIITA 249

Query: 218 KIKGLSNYQIVTQHVLRNAIPPMIPKFGVQLSSMLTLAIITESIFNWPGIGRWLLDALAN 277
           ++KGLS  +IV  H   N    ++    +    +L  A++ E++F WPG G++L  +L  
Sbjct: 250 RVKGLSQRRIVWGHAFGNIRVQLLTIVALAYGGLLEGAVLIETVFAWPGFGQYLTSSLLL 309

Query: 278 RDFMSIQAGVIVVGTLVLTANILSDLIGAAANPLVR 313
            D  ++ A V+++G + +T N++SD +    +P  R
Sbjct: 310 GDMNAVMACVLLIGLIFVTLNLISDALYKIFDPRTR 345