Pairwise Alignments

Query, 320 a.a., antimicrobial peptide ABC transporter permease SapB from Vibrio cholerae E7946 ATCC 55056

Subject, 304 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

 Score =  138 bits (347), Expect = 2e-37
 Identities = 78/268 (29%), Positives = 135/268 (50%), Gaps = 32/268 (11%)

Query: 47  YLVQLMEFNFGLN-KNGVPILHELLVVFPATIELCTIAFILSLLVGIPIGTLAGMRQGKW 105
           YL  LM  +FG + +     +   L  FPAT++L  +A  L+ ++ I +G LA  R G  
Sbjct: 67  YLQNLMSLDFGQSLRQNRSAIEVALEAFPATLKLALVAMSLATVLAIVVGALAAARPGSL 126

Query: 106 LDTIISFISMSGYSAPIFWLALMMIMAFSLHFPVFPVAGRYDLLYQIDHVTGFALIDAFL 165
            D I   +S++G S P FW+A++ I+ F++   + P +G           TG AL     
Sbjct: 127 FDRIAGLVSLAGASTPDFWIAIVGILVFAVGLGILPTSG-----------TGTAL----- 170

Query: 166 SQSPYRSQALQSVIEHLTLPCLVLALAPTTQVIGQMRASVAEVMNQNYIRAAKIKGLSNY 225
                          H  +P +VL L P   ++  +R ++   +   +I+ A  KG+   
Sbjct: 171 ---------------HWIMPIVVLMLRPFGLLVQVVRGTMISALASPFIKTAHAKGMKRR 215

Query: 226 QIVTQHVLRNAIPPMIPKFGVQLSSMLTLAIITESIFNWPGIGRWLLDALANRDFMSIQA 285
           +I+  H LRN++ P+I   G   + ++  A++ E+IF WPGIG+ ++D++  RDF  +Q+
Sbjct: 216 KIIFGHALRNSLLPVITVAGDLATGLINGAVVVETIFGWPGIGKLMIDSIIQRDFAVVQS 275

Query: 286 GVIVVGTLVLTANILSDLIGAAANPLVR 313
            ++V    +   NI  DL+ A  +P +R
Sbjct: 276 TILVTAIAIFIVNIAIDLLYAVLDPRIR 303