Pairwise Alignments
Query, 320 a.a., antimicrobial peptide ABC transporter permease SapB from Vibrio cholerae E7946 ATCC 55056
Subject, 304 a.a., ABC transporter permease from Sinorhizobium meliloti 1021
Score = 138 bits (347), Expect = 2e-37
Identities = 78/268 (29%), Positives = 135/268 (50%), Gaps = 32/268 (11%)
Query: 47 YLVQLMEFNFGLN-KNGVPILHELLVVFPATIELCTIAFILSLLVGIPIGTLAGMRQGKW 105
YL LM +FG + + + L FPAT++L +A L+ ++ I +G LA R G
Sbjct: 67 YLQNLMSLDFGQSLRQNRSAIEVALEAFPATLKLALVAMSLATVLAIVVGALAAARPGSL 126
Query: 106 LDTIISFISMSGYSAPIFWLALMMIMAFSLHFPVFPVAGRYDLLYQIDHVTGFALIDAFL 165
D I +S++G S P FW+A++ I+ F++ + P +G TG AL
Sbjct: 127 FDRIAGLVSLAGASTPDFWIAIVGILVFAVGLGILPTSG-----------TGTAL----- 170
Query: 166 SQSPYRSQALQSVIEHLTLPCLVLALAPTTQVIGQMRASVAEVMNQNYIRAAKIKGLSNY 225
H +P +VL L P ++ +R ++ + +I+ A KG+
Sbjct: 171 ---------------HWIMPIVVLMLRPFGLLVQVVRGTMISALASPFIKTAHAKGMKRR 215
Query: 226 QIVTQHVLRNAIPPMIPKFGVQLSSMLTLAIITESIFNWPGIGRWLLDALANRDFMSIQA 285
+I+ H LRN++ P+I G + ++ A++ E+IF WPGIG+ ++D++ RDF +Q+
Sbjct: 216 KIIFGHALRNSLLPVITVAGDLATGLINGAVVVETIFGWPGIGKLMIDSIIQRDFAVVQS 275
Query: 286 GVIVVGTLVLTANILSDLIGAAANPLVR 313
++V + NI DL+ A +P +R
Sbjct: 276 TILVTAIAIFIVNIAIDLLYAVLDPRIR 303