Pairwise Alignments

Query, 320 a.a., antimicrobial peptide ABC transporter permease SapB from Vibrio cholerae E7946 ATCC 55056

Subject, 311 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

 Score =  139 bits (350), Expect = 9e-38
 Identities = 81/271 (29%), Positives = 138/271 (50%), Gaps = 30/271 (11%)

Query: 46  SYLVQLMEFNFGLN-KNGVPILHELLVVFPATIELCTIAFILSLLVGIPIGTLAGMRQGK 104
           +Y+  L +F+ G + +   P++  +     A+++L   A I +L++ +P+G +A +R G 
Sbjct: 70  TYVTDLAQFDLGTSFRTRQPVIDLINDRMWASLQLAIAAMIFALVISVPLGFVAALRPGS 129

Query: 105 WLDTIISFISMSGYSAPIFWLALMMIMAFSLHFPVFPVAGRYDLLYQIDHVTGFALIDAF 164
            LDT+    ++SG S P FWL L+M+  F+L     P  G  D                 
Sbjct: 130 VLDTVTMIGAVSGLSMPQFWLGLLMMYLFALQLNWLPSFGYGD----------------- 172

Query: 165 LSQSPYRSQALQSVIEHLTLPCLVLALAPTTQVIGQMRASVAEVMNQNYIRAAKIKGLSN 224
                           +L LP + L + P   +    RA V +V+N ++IR A  KG+S 
Sbjct: 173 ------------GSFRNLILPAVTLGVTPLALLARTTRAGVLDVLNADFIRTAHSKGMSE 220

Query: 225 YQIVTQHVLRNAIPPMIPKFGVQLSSMLTLAIITESIFNWPGIGRWLLDALANRDFMSIQ 284
            ++V  HV RNA+  ++   G+Q  S++  A++ E +F WPGIG  L+D++A+RD   +Q
Sbjct: 221 AKVVRWHVARNALVLIVTTVGLQFGSLIGQAVVIEKLFAWPGIGSLLVDSVASRDIPVVQ 280

Query: 285 AGVIVVGTLVLTANILSDLIGAAANPLVRKE 315
             ++V+    L  N   DLI AA +P +++E
Sbjct: 281 GTILVIVLWFLVINTAVDLIYAAIDPRIKQE 311