Pairwise Alignments

Query, 320 a.a., antimicrobial peptide ABC transporter permease SapB from Vibrio cholerae E7946 ATCC 55056

Subject, 315 a.a., peptide ABC transporter permease from Sinorhizobium meliloti 1021

 Score =  159 bits (401), Expect = 1e-43
 Identities = 80/259 (30%), Positives = 142/259 (54%), Gaps = 24/259 (9%)

Query: 55  NFGLNKNGVPILHELLVVFPATIELCTIAFILSLLVGIPIGTLAGMRQGKWLDTIISFIS 114
           +F LN+   P+L E+L  F AT+ L  ++ +L  ++G+  G ++ +RQ  W D +I+F  
Sbjct: 80  SFALNR---PVLDEVLERFQATLVLAGVSLVLCSVIGLLAGVVSAVRQFGWADRVITFFV 136

Query: 115 MSGYSAPIFWLALMMIMAFSLHFPVFPVAGRYDLLYQIDHVTGFALIDAFLSQSPYRSQA 174
           ++G S P FWL L++I  F++H+ + P +G Y +                     Y    
Sbjct: 137 LAGISTPSFWLGLLLIYLFAVHWRILPASGMYAV---------------------YGRGD 175

Query: 175 LQSVIEHLTLPCLVLALAPTTQVIGQMRASVAEVMNQNYIRAAKIKGLSNYQIVTQHVLR 234
           L+ ++ HL LP   LA+     +    R ++ EV+ Q+Y+R A+ KGL   +++  H  R
Sbjct: 176 LKDLLLHLILPAATLAVVAAGVIARLTRGAMLEVLRQDYVRTARAKGLPERRVIYAHAFR 235

Query: 235 NAIPPMIPKFGVQLSSMLTLAIITESIFNWPGIGRWLLDALANRDFMSIQAGVIVVGTLV 294
            A+  ++P  G+Q   +L  A+  E++F WPGIG  L+ A++ RD + +Q GV+VV    
Sbjct: 236 AALVSVVPAIGIQAGFVLGGAVYVETVFQWPGIGAMLVKAISTRDILLVQGGVLVVAASY 295

Query: 295 LTANILSDLIGAAANPLVR 313
           +  N+L+D++ +  +P +R
Sbjct: 296 VLFNLLADVVQSMLDPRIR 314