Pairwise Alignments

Query, 320 a.a., antimicrobial peptide ABC transporter permease SapB from Vibrio cholerae E7946 ATCC 55056

Subject, 307 a.a., peptide ABC transporter permease from Sinorhizobium meliloti 1021

 Score =  153 bits (387), Expect = 4e-42
 Identities = 92/271 (33%), Positives = 143/271 (52%), Gaps = 34/271 (12%)

Query: 47  YLVQLMEFNFG--LNKNGVPILHELLVVFPATIELCTIAFILSLLVGIPIGTLAGMRQGK 104
           YLV L  F+FG  L++N  P +   L  FP T++L  IA +LSL   + +G+LA  R   
Sbjct: 67  YLVDLARFDFGDALSRNR-PAMEVALEAFPQTLKLAVIAIVLSLCFAVVVGSLAAARPNS 125

Query: 105 WLDTIISFISMSGYSAPIFWLALMMIMAFSLHFPVFPVAGRYDLLYQIDHVTGFALIDAF 164
             D I S  S++G SAP FW+A++ I+ FS+   + P +G           TG AL    
Sbjct: 126 LFDKIASTASLAGASAPDFWVAIVAILVFSVGLGLLPTSG-----------TGTAL---- 170

Query: 165 LSQSPYRSQALQSVIEHLTLPCLVLALAPTTQVIGQMRASVAEVMNQNYIRAAKIKGLSN 224
                           H  +P  VL L P   ++  +R ++   +   Y++ A+ KG++ 
Sbjct: 171 ----------------HWIMPIFVLTLRPFGLLVQVVRGTMMGALASPYVKTARAKGVNR 214

Query: 225 YQIVTQHVLRNAIPPMIPKFGVQLSSMLTLAIITESIFNWPGIGRWLLDALANRDFMSIQ 284
            +IV +H LRN++ P+I   G   +S++  A++ E+IF WPGIG+ ++DA+  RDF  IQ
Sbjct: 215 SRIVFRHALRNSLLPVITVAGDLAASLVNGAVVVETIFGWPGIGKLMIDAIVRRDFALIQ 274

Query: 285 AGVIVVGTLVLTANILSDLIGAAANPLVRKE 315
           A V+V    +   NI  DL+ A  +P +R E
Sbjct: 275 ATVLVTAIAIFVLNIAIDLVYARLDPRIRFE 305