Pairwise Alignments

Query, 320 a.a., antimicrobial peptide ABC transporter permease SapB from Vibrio cholerae E7946 ATCC 55056

Subject, 343 a.a., peptide ABC transporter, permease protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  227 bits (578), Expect = 4e-64
 Identities = 121/340 (35%), Positives = 194/340 (57%), Gaps = 23/340 (6%)

Query: 1   MFVYTVRKFNLFIIT-LLILTMVGYSLARFDPHSPWTLIGF------------------- 40
           M +Y +R+ NLFI T +L+++++  + ++F     + L G                    
Sbjct: 1   MGIYLIRRLNLFIATSILMVSILFLATSQFPTDRVYALTGIDNPSGEQALQIIEDYQLDK 60

Query: 41  --WQGWSSYLVQLMEFNFGLNKNGVP-ILHELLVVFPATIELCTIAFILSLLVGIPIGTL 97
             ++ + +Y+ Q +  N G++      +  EL  V P + EL   + +L+LL+GIP+G L
Sbjct: 61  SEFRQYIAYVQQRLTGNLGISTTSQQSVAKELATVLPTSFELACFSGLLALLLGIPLGVL 120

Query: 98  AGMRQGKWLDTIISFISMSGYSAPIFWLALMMIMAFSLHFPVFPVAGRYDLLYQIDHVTG 157
           A + Q K     I  I+++GYS P+FWL L + + F +     P++G+ +LLY+I  VTG
Sbjct: 121 ASLNQHKLTQHAIMAITLTGYSVPVFWLGLSLSLWFGVRLGWLPISGQINLLYEIKPVTG 180

Query: 158 FALIDAFLSQSPYRSQALQSVIEHLTLPCLVLALAPTTQVIGQMRASVAEVMNQNYIRAA 217
           F LID  LS S YR  A +  + H+ LP + LA+ P T V+   RA++  VMNQ YIRAA
Sbjct: 181 FMLIDTLLSDSSYRISAFKDALAHIVLPAVTLAVLPFTVVVRITRAAMVNVMNQTYIRAA 240

Query: 218 KIKGLSNYQIVTQHVLRNAIPPMIPKFGVQLSSMLTLAIITESIFNWPGIGRWLLDALAN 277
           + +GL    I+ +H L NA+ P++   G+ L +  + AI+ E IF+WPG+G WL+  +  
Sbjct: 241 EARGLHTGMIILKHALPNALIPVLKHLGLMLGAFASYAIVVEVIFSWPGVGSWLVSGIYQ 300

Query: 278 RDFMSIQAGVIVVGTLVLTANILSDLIGAAANPLVRKEWY 317
           RD+  IQ G++ V  L++  +IL ++I  A+NPL RKE Y
Sbjct: 301 RDYTVIQGGILAVALLIIFLSILIEVIHTASNPLSRKELY 340