Pairwise Alignments

Query, 320 a.a., antimicrobial peptide ABC transporter permease SapB from Vibrio cholerae E7946 ATCC 55056

Subject, 336 a.a., Binding-protein-dependent transport systems inner membrane component (NCBI) from Rhodospirillum rubrum S1H

 Score =  216 bits (550), Expect = 6e-61
 Identities = 117/336 (34%), Positives = 189/336 (56%), Gaps = 26/336 (7%)

Query: 1   MFVYTVRKFNLFIITLLILTMVGYSLARFDPHSPWTLIGFWQG----------------- 43
           M  + +R+  L I   + +T++ ++L    P  P  ++   +G                 
Sbjct: 1   MISFILRRVVLIIPAFIGVTLLAFALIHLIPGDPILVMAGERGVSPARHAMLMTQLGLDR 60

Query: 44  --WSSYLVQLMEFNFGLNKNGV----PILHELLVVFPATIELCTIAFILSLLVGIPIGTL 97
             W  YL  L +   G   N +    P++ E   +FPATIEL   A + ++L+GIP G L
Sbjct: 61  PLWEQYLTYLGKALQGDLGNSIVTRQPVIEEFKTLFPATIELGVFAMVFAVLIGIPAGML 120

Query: 98  AGMRQGKWLDTIISFISMSGYSAPIFWLALMMIMAFSLHFPVFPVAGRYDLLYQIDHVTG 157
           A +++G  LD  +  +S++GYS PIFW  L++IM  S      PV+GR D +  ID VTG
Sbjct: 121 AAVKRGTSLDHGVMVVSLTGYSMPIFWWGLLLIMLVSGILGWTPVSGRIDSIMWIDTVTG 180

Query: 158 FALIDAFLSQSPYRSQALQSVIEHLTLPCLVLALAPTTQVIGQMRASVAEVMNQNYIRAA 217
           F LID+ LS  P    A  S + HL LP +V+   P   +    R+++ EV+ ++Y+R A
Sbjct: 181 FMLIDSLLSDEP---GAFLSAVHHLILPAIVVGTIPLAVIARMTRSAMLEVLREDYVRTA 237

Query: 218 KIKGLSNYQIVTQHVLRNAIPPMIPKFGVQLSSMLTLAIITESIFNWPGIGRWLLDALAN 277
           + KG+S  ++V  H LRNA+ P+I   G+Q   +L  AI+TE+IF WPG+G+WL+D++  
Sbjct: 238 RAKGVSPGRVVMVHALRNALIPVITVIGLQTGVLLAGAILTETIFAWPGVGKWLVDSINR 297

Query: 278 RDFMSIQAGVIVVGTLVLTANILSDLIGAAANPLVR 313
           RD+ ++Q G++++ T+V+  N+L D++    NP +R
Sbjct: 298 RDYPAVQGGILLISTVVILVNLLVDVLYGVINPRIR 333