Pairwise Alignments

Query, 320 a.a., antimicrobial peptide ABC transporter permease SapB from Vibrio cholerae E7946 ATCC 55056

Subject, 314 a.a., Binding-protein-dependent transport systems inner membrane component (NCBI) from Rhodospirillum rubrum S1H

 Score =  135 bits (340), Expect = 1e-36
 Identities = 76/268 (28%), Positives = 137/268 (51%), Gaps = 32/268 (11%)

Query: 47  YLVQLMEFNFGLN-KNGVPILHELLVVFPATIELCTIAFILSLLVGIPIGTLAGMRQGKW 105
           +L + +  +FG++   G P+L +LL   PAT+ L  +A  L+L + IP+G  A  R+   
Sbjct: 71  WLNKALHLDFGVSYATGRPVLPDLLHYLPATLHLAGVALALTLGLSIPLGMWAARRRDAL 130

Query: 106 LDTIISFISMSGYSAPIFWLALMMIMAFSLHFPVFPVAGRYDLLYQIDHVTGFALIDAFL 165
            D I+  ++  G S P FWL  ++++ FS+     P  GR                    
Sbjct: 131 PDQIVRGVAFLGVSMPNFWLGFLLVLVFSVELGWLPAMGR-------------------- 170

Query: 166 SQSPYRSQALQSVIEHLTLPCLVLALAPTTQVIGQMRASVAEVMNQNYIRAAKIKGLSNY 225
                         EH+ +P + +A    +     +RAS+ EV  Q ++  A+++GLS  
Sbjct: 171 -----------GGAEHMIMPAVAIAFMSLSINARLLRASMLEVSGQRHVYYARLRGLSAA 219

Query: 226 QIVTQHVLRNAIPPMIPKFGVQLSSMLTLAIITESIFNWPGIGRWLLDALANRDFMSIQA 285
           ++   H+LRNA+ P+I   G+ +  ++   ++ ESIF WPG+GR+ + A+ NRD+  IQ 
Sbjct: 220 KVERAHILRNALLPIITATGMHVGELIGGTLVIESIFGWPGVGRFAVSAIFNRDYPVIQC 279

Query: 286 GVIVVGTLVLTANILSDLIGAAANPLVR 313
             +++  + +  N++ D++ A A+P +R
Sbjct: 280 FTLLMVLIFVLCNLIVDIVYAWADPRIR 307