Pairwise Alignments

Query, 320 a.a., antimicrobial peptide ABC transporter permease SapB from Vibrio cholerae E7946 ATCC 55056

Subject, 326 a.a., Binding-protein-dependent transport systems inner membrane component (NCBI) from Rhodospirillum rubrum S1H

 Score =  145 bits (365), Expect = 2e-39
 Identities = 82/268 (30%), Positives = 146/268 (54%), Gaps = 18/268 (6%)

Query: 47  YLVQLMEFNFGLNK-NGVPILHELLVVFPATIELCTIAFILSLLVGIPIGTLAGMRQGKW 105
           YL++L++F+ G +   G P++  ++   P T+ L   + ++++  G+ +G LA  R  KW
Sbjct: 72  YLLRLVQFDLGYSAIYGKPVIDVIVERLPVTLLLMGASLVVAVSGGVALGVLAARRVNKW 131

Query: 106 LDTIISFISMSGYSAPIFWLALMMIMAFSLHFPVFPVAGRYDLLYQIDHVTGFALIDAFL 165
            DT+IS + +  Y+ P FWL LM ++ F++     P  G  ++      +T         
Sbjct: 132 PDTLISTLGLVFYATPSFWLGLMAVVVFAVKLGWLPPGGFEEVGAGYQGLT--------- 182

Query: 166 SQSPYRSQALQSVIEHLTLPCLVLALAPTTQVIGQMRASVAEVMNQNYIRAAKIKGLSNY 225
                  +AL  +  H+ LP + L+L      +  MRAS+ EV + +++R A+ KG+   
Sbjct: 183 -------RALD-IARHMALPTITLSLIFLATYLRIMRASMLEVSSLDFVRTARAKGVDET 234

Query: 226 QIVTQHVLRNAIPPMIPKFGVQLSSMLTLAIITESIFNWPGIGRWLLDALANRDFMSIQA 285
           +IVT HVLRNA+ PM+   G+  S+ML  +++ ES+F  PG+GR   +++  RD  ++  
Sbjct: 235 KIVTHHVLRNALLPMLTLIGLNASTMLGGSVVVESVFTLPGLGRLAYESVVQRDLNTLLG 294

Query: 286 GVIVVGTLVLTANILSDLIGAAANPLVR 313
            V++   LV+  N + DL+ A  +P +R
Sbjct: 295 IVLLSAVLVIVVNFIVDLLYARLDPRIR 322