Pairwise Alignments

Query, 320 a.a., antimicrobial peptide ABC transporter permease SapB from Vibrio cholerae E7946 ATCC 55056

Subject, 333 a.a., Binding-protein-dependent transport systems inner membrane component (NCBI) from Rhodospirillum rubrum S1H

 Score =  161 bits (407), Expect = 2e-44
 Identities = 86/270 (31%), Positives = 149/270 (55%), Gaps = 6/270 (2%)

Query: 47  YLVQLMEFNFGLN-KNGVPILHELLVVFPATIELCTIAFILSLLVGIPIGTLAGMRQGKW 105
           Y+  +++ + G + + G PI  EL  VFPAT+EL T+  ++ +L G+P+G LA +R+   
Sbjct: 67  YIGNVLQGDLGQSVRTGEPIASELARVFPATLELATLGTLIGVLAGVPLGILAALRKDTL 126

Query: 106 LDTIISFISMSGYSAPIFWLALMMIMAFSLHFPVFPVAGRYDLLYQ--IDHVTGFALIDA 163
           +D ++ FI + GYS PIFWL LM ++ F     V P  GR D  Y+  +  +TG   ID 
Sbjct: 127 IDHLVRFIGLMGYSFPIFWLGLMGLLVFYATLGVLPGPGRLDFGYEDFVTPITGLMTIDT 186

Query: 164 FLSQSPYRSQALQSVIEHLTLPCLVLALAPTTQVIGQMRASVAEVMNQNYIRAAKIKGLS 223
            L+         ++ + HL LP  +L       +    R+ +   + Q YI  A++KG+S
Sbjct: 187 LLAGD---MDLFRNALAHLILPAGLLGYYSLAYISRMTRSLMLGELRQEYIITARVKGVS 243

Query: 224 NYQIVTQHVLRNAIPPMIPKFGVQLSSMLTLAIITESIFNWPGIGRWLLDALANRDFMSI 283
             +IV +H L N   P+I    +  + +L  +++TE++F+W G+G ++ D++  +D  ++
Sbjct: 244 ETKIVWKHALGNIKVPLITVVALSYAGLLEGSVLTETVFSWRGLGLYITDSIFGQDMPAV 303

Query: 284 QAGVIVVGTLVLTANILSDLIGAAANPLVR 313
             G IVVG + +  N+L+D+     +P  R
Sbjct: 304 MGGTIVVGVIFIVINMLTDVAYRFLDPRSR 333