Pairwise Alignments

Query, 320 a.a., antimicrobial peptide ABC transporter permease SapB from Vibrio cholerae E7946 ATCC 55056

Subject, 356 a.a., Binding-protein-dependent transport systems inner membrane component (NCBI) from Rhodospirillum rubrum S1H

 Score =  182 bits (463), Expect = 8e-51
 Identities = 103/323 (31%), Positives = 170/323 (52%), Gaps = 26/323 (8%)

Query: 14  ITLLILTMVGYSLARFDPHSPW-TLIG--------------------FWQGWSSYLVQLM 52
           ITLL L +V + + R  P  P   L+G                     W+ ++ Y  +++
Sbjct: 37  ITLLGLLLVTFLIGRLTPIDPLLALLGDRASAATYAAARQRLGLDLPLWRQFAVYAGEIL 96

Query: 53  EFNFGLNK-NGVPILHELLVVFPATIELCTIAFILSLLVGIPIGTLAGMRQGKWLDTIIS 111
             N G +   G P+L ++   FPAT EL ++A    ++ G+P G +A   +G W D ++ 
Sbjct: 97  RGNLGRSTLTGQPVLADIAQFFPATFELASLAIFFGVVFGVPGGVVAATHKGAWPDHVLR 156

Query: 112 FISMSGYSAPIFWLALMMIMAFSLHFPVFPVAGRYDLLYQ-IDHVTGFALIDAFLSQSPY 170
            +++ GYS PIFWL ++ ++ F          GR D+LYQ I  VTG  L+D  L++SP 
Sbjct: 157 LVTLVGYSVPIFWLGIVGLVVFYAKLDWVAGPGRIDILYQDIPAVTGLMLVDTVLARSP- 215

Query: 171 RSQALQSVIEHLTLPCLVLALAPTTQVIGQMRASVAEVMNQNYIRAAKIKGLSNYQIVTQ 230
             +A    + HL LP  +L       +    RA++   ++Q+YI  A++KGL   +++  
Sbjct: 216 --EAFLDALRHLILPAAILGYYAAAVIARMTRAAMLAELSQDYILTARVKGLGRRRVIWG 273

Query: 231 HVLRNAIPPMIPKFGVQLSSMLTLAIITESIFNWPGIGRWLLDALANRDFMSIQAGVIVV 290
           H   NA+ P+I    +  +S+L  A++TE+IF WPG+G ++  +L N D  ++  G +VV
Sbjct: 274 HAFPNALVPIITIITLSYASLLEGAVLTETIFAWPGLGLYITQSLFNADLTAVLGGTLVV 333

Query: 291 GTLVLTANILSDLIGAAANPLVR 313
           G L +  N+L+DL    A+P VR
Sbjct: 334 GVLFIGLNLLADLFSILADPRVR 356