Pairwise Alignments

Query, 320 a.a., antimicrobial peptide ABC transporter permease SapB from Vibrio cholerae E7946 ATCC 55056

Subject, 343 a.a., binding-protein-dependent transport systems inner membrane component (RefSeq) from Shewanella loihica PV-4

 Score =  214 bits (546), Expect = 2e-60
 Identities = 116/337 (34%), Positives = 188/337 (55%), Gaps = 23/337 (6%)

Query: 4   YTVRKFNLFIITLLILTMVGYSL-ARFDPHSPWTLIGFWQGWS----------------- 45
           Y +R+ NLF+ T L+L +V + + ++F     + L G     +                 
Sbjct: 4   YLIRRLNLFLATSLVLFLVMFIVTSKFPVEHTFALTGLQSPTAQELTQIAQDYQLDSSQA 63

Query: 46  ----SYLVQLMEFNFGLNKNGV-PILHELLVVFPATIELCTIAFILSLLVGIPIGTLAGM 100
               +YL Q +  N G++     P++ EL  V PA+ EL  +A +++L++G+P+G LA +
Sbjct: 64  HQFLAYLQQRLSGNLGISATSQNPVIDELTAVLPASFELGIVAGLIALVLGLPLGVLASL 123

Query: 101 RQGKWLDTIISFISMSGYSAPIFWLALMMIMAFSLHFPVFPVAGRYDLLYQIDHVTGFAL 160
            + K     I  I+++GYS P+FWL L + + F +     P++G+ +LLY I  VTGF L
Sbjct: 124 SKHKITQHTIMAITLTGYSIPVFWLGLSLSLWFGVQLGWLPISGQINLLYDIRPVTGFLL 183

Query: 161 IDAFLSQSPYRSQALQSVIEHLTLPCLVLALAPTTQVIGQMRASVAEVMNQNYIRAAKIK 220
           ID  LS S Y + A    + H+ LP + LA+ P T V+   RA++  +M Q YI+AA+ +
Sbjct: 184 IDTLLSDSQYATSAFIDALLHIILPAVTLAVLPFTVVVRITRAAMIAIMEQTYIKAAEAR 243

Query: 221 GLSNYQIVTQHVLRNAIPPMIPKFGVQLSSMLTLAIITESIFNWPGIGRWLLDALANRDF 280
           GL    IV +H L NA  P++   G+ L +  + A++ E IF+WPG+G WL+  +  RD+
Sbjct: 244 GLHTSIIVLRHALPNAFIPVLKNLGLMLGAFASYAMVVEVIFSWPGVGAWLVSGIYQRDY 303

Query: 281 MSIQAGVIVVGTLVLTANILSDLIGAAANPLVRKEWY 317
             IQ G++ V  +++  +IL ++I  A NPL RKE Y
Sbjct: 304 TVIQGGILAVALIIIFLSILIEVIHTAMNPLSRKELY 340