Pairwise Alignments

Query, 320 a.a., antimicrobial peptide ABC transporter permease SapB from Vibrio cholerae E7946 ATCC 55056

Subject, 340 a.a., putative D,D-dipeptide transport system permease protein DdpB from Enterobacter sp. TBS_079

 Score =  168 bits (425), Expect = 2e-46
 Identities = 85/254 (33%), Positives = 148/254 (58%), Gaps = 4/254 (1%)

Query: 60  KNGVPILHELLVVFPATIELCTIAFILSLLVGIPIGTLAGMRQGKWLDTIISFISMSGYS 119
           + G P+  +L   FPAT+EL   + +L+L++G+P+G L+ + + +WLD ++  ++M+G S
Sbjct: 84  RTGRPVAEDLKAFFPATLELAFCSLLLALVIGVPLGILSAVYRDRWLDHLVRLMAMTGIS 143

Query: 120 APIFWLALMMIMAFSLHFPVFPVAGRYD-LLYQIDHVTGFALIDAFLSQSPYRSQALQSV 178
            P FWL L +I+ F  H  + P  GR D  L     VTGF L+DA L  +    +   + 
Sbjct: 144 TPAFWLGLGVIVLFYGHLQLLPGGGRLDDWLDPPTRVTGFYLVDALLEGN---GEVFFNA 200

Query: 179 IEHLTLPCLVLALAPTTQVIGQMRASVAEVMNQNYIRAAKIKGLSNYQIVTQHVLRNAIP 238
           ++HL LP + LA      V  Q+R+++ E ++++YIR A+  GL  + IV ++ L NA+ 
Sbjct: 201 LQHLILPSMTLAFVHLGIVARQVRSAMLEQLSEDYIRTARASGLPGWYIVLRYALPNAMI 260

Query: 239 PMIPKFGVQLSSMLTLAIITESIFNWPGIGRWLLDALANRDFMSIQAGVIVVGTLVLTAN 298
           P I   G+ L  +L  A++TE++F WPG+G W++ ++   DF ++    +VV    +  N
Sbjct: 261 PSITVLGLALGDLLYGAVLTETVFAWPGMGAWVVTSIQALDFPAVMGFAVVVSLAYVLVN 320

Query: 299 ILSDLIGAAANPLV 312
           ++ DL+    +P +
Sbjct: 321 LVVDLLYLWVDPRI 334