Pairwise Alignments

Query, 320 a.a., antimicrobial peptide ABC transporter permease SapB from Vibrio cholerae E7946 ATCC 55056

Subject, 343 a.a., binding-protein-dependent transport systems inner membrane component (RefSeq) from Shewanella sp. ANA-3

 Score =  216 bits (551), Expect = 5e-61
 Identities = 118/341 (34%), Positives = 189/341 (55%), Gaps = 25/341 (7%)

Query: 1   MFVYTVRKFNLFIITLLILT-MVGYSLARFDPHSPWTLIGFWQGWSSYLVQLMEFNFGLN 59
           MF Y +R+ NLF+ T L++  ++ Y+   F     + L G      S LVQ+ E ++ L+
Sbjct: 1   MFRYLLRRLNLFLATSLVMVGVLFYATGLFPVERTFALTGIHAPSESQLVQI-EQDYKLD 59

Query: 60  KN-----------------GVPIL------HELLVVFPATIELCTIAFILSLLVGIPIGT 96
            N                 GV +        EL  V PA+ EL  +A ++++ +G+P+G 
Sbjct: 60  SNKAMQFIAYLQQRLSGNLGVSVTSHQSVAEELSSVLPASFELAVMAAVIAIGLGVPLGV 119

Query: 97  LAGMRQGKWLDTIISFISMSGYSAPIFWLALMMIMAFSLHFPVFPVAGRYDLLYQIDHVT 156
           LA   Q K     I  I+++GYS P+FWL L + + F +     P++G+ +LLY+I  VT
Sbjct: 120 LASQSQHKLTQNTIMAITLTGYSVPVFWLGLYLSLWFGVDLGWLPISGQLNLLYEIKPVT 179

Query: 157 GFALIDAFLSQSPYRSQALQSVIEHLTLPCLVLALAPTTQVIGQMRASVAEVMNQNYIRA 216
           GF L+D  LS S YR  A +  + H+ LP   LA+ P T V+   R+++  VMNQ +IRA
Sbjct: 180 GFMLVDILLSDSEYRISAFKDALLHIVLPATTLAVLPFTVVVRSTRSAMMNVMNQTFIRA 239

Query: 217 AKIKGLSNYQIVTQHVLRNAIPPMIPKFGVQLSSMLTLAIITESIFNWPGIGRWLLDALA 276
           A+ +G+    I+ +H L NA+ P++   G+ L +  + AI+ E IF+WPG+G WL+  + 
Sbjct: 240 AEARGMHTNTIILRHALPNALIPVLKHLGLMLGAFASYAIVVEMIFSWPGVGSWLVSGIY 299

Query: 277 NRDFMSIQAGVIVVGTLVLTANILSDLIGAAANPLVRKEWY 317
            RD+  IQ G++ V  L++  +IL +++    NPL RK+ Y
Sbjct: 300 QRDYTVIQGGILAVALLIIFLSILIEVLHTVFNPLSRKDLY 340