Pairwise Alignments

Query, 540 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 531 a.a., periplasmic dipeptide-binding protein from Sinorhizobium meliloti 1021

 Score =  342 bits (878), Expect = 2e-98
 Identities = 197/512 (38%), Positives = 284/512 (55%), Gaps = 8/512 (1%)

Query: 31  SSGFVYCGESAPTTFNPQLADNDITSDALGPQIYNTLLTIDPETHLPVASLASSWTVNST 90
           S  FV+C E +P  F+P L     T DA    +Y+ LL     T      LA SWT++  
Sbjct: 23  SKTFVFCSEGSPEGFDPGLYTAGTTFDAAAHTVYSRLLEFKKGTTETEPGLAESWTISDD 82

Query: 91  GLEYVFKLRPDVAFQTTPWFSPTRPLNADDVVFSFRRIIDPTNPYHK-VGQTQYPWFKGI 149
           GLEY FKLRP V FQTT +F+PTR LNADDV+FS  R     +P+H  V    + +F G+
Sbjct: 83  GLEYTFKLRPGVKFQTTEFFTPTRELNADDVIFSIERQWKSDHPWHGYVTGGSWEYFAGM 142

Query: 150 DFQNLLVDVSALDDLTVKFVLSRPDNSFLSNIATSHAVILSLEYANQLIIDDEKEKLDNL 209
               LL  V  +DD+TVK  L R +  FL+N+A   A I+S EYA++L  + +  +L+ +
Sbjct: 143 GLPELLESVEKVDDMTVKIKLKRKEAPFLANLAMPFASIMSKEYADKLQAEGKMNQLNQM 202

Query: 210 PLGTGPFYLAEYHPRDLIRLKRHPQYWEGAAKVEQVVFDISQRGTGMLAKLLRNECDVLN 269
           PLGTGPF    Y    +IR K HP +W G  K++ +VF I+        KL   EC ++ 
Sbjct: 203 PLGTGPFAFVGYQQDAVIRYKAHPDFWGGKQKIDDLVFAITTDAAVRFQKLQAGECHLMP 262

Query: 270 APISSQLPAIEKNPDIVLQTTPAMNVAFIAVNTQHPALNDNRVRKALNFAINRQNILDSV 329
            P ++ + A++ +P++ +     +NVA++A NT  P  +   VRKALN AIN+Q I+D+V
Sbjct: 263 YPNAADVEAMKADPNLKVMEQAGLNVAYLAYNTTQPPFDKVEVRKALNKAINKQAIVDAV 322

Query: 330 YYGTGSIAFTILPPTSWAYQQDTAQIRYDRNYAQALLREAGFATGLELTMSVPVEPKA-- 387
           + G  + A   +PPT W+Y +      YD   A+ +L +AG     +L+M V   P A  
Sbjct: 323 FQGQATPATNPIPPTMWSYNEHIEDDTYDPEAAKKMLEDAGVK---DLSMKVWAMPVARP 379

Query: 388 YNPSPRKTAELIQANLADIGVTLRLISEDRSERQELSIRNNID-LYLSGWTGDTGDPDNF 446
           Y  + R+ AEL+QA+ A +GV + ++S + +E  E S   + D   + GWTGD GDPDNF
Sbjct: 380 YMLNARRAAELMQADFAKVGVKVEIVSYEWAEYLEKSKAKDRDGAVILGWTGDNGDPDNF 439

Query: 447 LRPLLSCDSNRAGLNVSMWCDSDFDFLLDLALEANKPRYRLNLYHQAQNILNQEFPVIPL 506
           L  LL CD+   G N + WCD +FD L+  A EA+    R  LY +AQ +  +E P   L
Sbjct: 440 LDTLLGCDA-VGGNNRAQWCDKEFDELVTKAKEASDVAERTKLYEEAQVVFKREAPWATL 498

Query: 507 AHGIQFTAYSKSLTGIRISPFNVQPFNTVERV 538
            H +      K++ G   SP     F+ V+ V
Sbjct: 499 DHSLSIVPMRKNVEGFVQSPLGDFAFDGVDIV 530