Pairwise Alignments

Query, 540 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 542 a.a., peptide ABC transporter, periplasmic peptide-binding protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  393 bits (1009), Expect = e-113
 Identities = 223/541 (41%), Positives = 311/541 (57%), Gaps = 3/541 (0%)

Query: 1   MNALLRFTLGLCSMTLLAGCGENIDHSKIRSSGFVYCGESAPTTFNPQLADNDITSDALG 60
           MNAL         + LL G      H ++   G VYC E  P +FNPQ   +  T DA  
Sbjct: 1   MNALTTRLYRFALLPLLGGWLAACGHQQL-PPGVVYCSEGNPESFNPQTVTSGTTIDATS 59

Query: 61  PQIYNTLLTIDPETHLPVASLASSWTVNSTGLEYVFKLRPDVAFQTTPWFSPTRPLNADD 120
            QIY+ L+  D E    V +LA  W+++  GLEY F LR  V F  +  F+P+RP+NADD
Sbjct: 60  QQIYSRLVDYDAEEGKIVPALAERWSISDDGLEYRFVLRQGVQFHHSAKFTPSRPMNADD 119

Query: 121 VVFSFRRIIDPTNPYHKVGQTQYPWFKGIDFQNLLVDVSALDDLTVKFVLSRPDNSFLSN 180
           V+FSF+RI+D  +P+H V ++ YP+F+ IDF N +  V+   D  V F L+  D SFLSN
Sbjct: 120 VLFSFQRILDDEHPFHWVSRSGYPFFQSIDFANQVASVTKAGDNEVVFKLNHTDASFLSN 179

Query: 181 IATSHAVILSLEYANQLIIDDEKEKLDNLPLGTGPFYLAEYHPRDLIRLKRHPQYWEGAA 240
           +AT  AVILS EYA Q +     E+LD   +GTGPF L EY   + IR +RH  YW  A 
Sbjct: 180 LATDFAVILSAEYAAQQLRAGTPEQLDIQAIGTGPFRLVEYVKNEYIRYRRHEDYWGKAP 239

Query: 241 KVEQVVFDISQRGTGMLAKLLRNECDVLNAPISSQLPAIEKNPDIVLQTTPAMNVAFIAV 300
           +++ +V+DI+ + T  L+KL+  +C V   P + +L  IE +P++ L++ P +NVAF A 
Sbjct: 240 EIDMLVYDITSKSTVRLSKLITGDCSVSALPKAGELDLIEAHPELTLESKPGLNVAFWAF 299

Query: 301 NTQHPALNDNRVRKALNFAINRQNILDSVYYGTGSIAFTILPPTSWAYQQD-TAQIRYDR 359
           NTQ    ND RVRKAL+ AI+++NIL +VY  T   A ++LPP+SWAY +D    I Y  
Sbjct: 300 NTQKAPFNDVRVRKALSLAIDKRNILAAVYQDTAVEAQSLLPPSSWAYARDYELDIDYSP 359

Query: 360 NYAQALLREAGFATGLELTMSVPVEPKAYNPSPRKTAELIQANLADIGVTLRLISEDRSE 419
           + A  LL +AG         ++PV  +AYNP+  KTAELIQA+LA+IGV   +IS D S 
Sbjct: 360 SRAMTLLADAGIRNLSIDIWAMPV-ARAYNPNALKTAELIQADLANIGVKANIISYDWSV 418

Query: 420 RQELSIRNNIDLYLSGWTGDTGDPDNFLRPLLSCDSNRAGLNVSMWCDSDFDFLLDLALE 479
             +   +++ D  L GW  D  DPDNF  PLLSC S  +G N S WC+  FD LL  A  
Sbjct: 419 FTQKLNQSDYDSVLIGWNADNSDPDNFFSPLLSCASMASGSNRSRWCNPAFDQLLSKARS 478

Query: 480 ANKPRYRLNLYHQAQNILNQEFPVIPLAHGIQFTAYSKSLTGIRISPFNVQPFNTVERVA 539
                 R  LY +AQ  + +E P+   AH  +   +  ++  + ++PF    F  ++   
Sbjct: 479 TTDRLERTALYQEAQATVAKELPLFAFAHAKRSLVHRNNIQHMPVTPFGGIAFADIQPAT 538

Query: 540 E 540
           E
Sbjct: 539 E 539