Pairwise Alignments

Query, 540 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 547 a.a., extracellular solute-binding protein (RefSeq) from Shewanella loihica PV-4

 Score =  406 bits (1044), Expect = e-118
 Identities = 225/529 (42%), Positives = 311/529 (58%), Gaps = 13/529 (2%)

Query: 4   LLRFTLG---LCSMTLLAGCGENIDHSKIRSSGFVYCGESAPTTFNPQLADNDITSDALG 60
           L R TLG    C + LL+ CG     +++  SG VYC E  P +FNPQL  +  T DA  
Sbjct: 5   LKRLTLGSAFCCIVPLLSACGP----TRV-PSGLVYCSEGNPESFNPQLVTSGTTVDATS 59

Query: 61  PQIYNTLLTIDPETHLPVASLASSWTVNSTGLEYVFKLRPDVAFQTTPWFSPTRPLNADD 120
            Q+Y+ L+  D  T     SLA+SW ++     Y F+LR DV F  +  F+P+R  NADD
Sbjct: 60  QQLYDGLVDYDARTGEMTPSLATSWHLSDDEKVYTFELRQDVQFHRSDIFTPSRNFNADD 119

Query: 121 VVFSFRRIIDPTNPYHKVGQTQYPWFKGIDFQNLLVDVSALDDLTVKFVLSRPDNSFLSN 180
           V+FSF RIID  NPYH V ++ YP+F+ I F  L+ D+  +DD  V F L   D SFLSN
Sbjct: 120 VLFSFNRIIDTDNPYHFVSKSGYPFFQSIGFAELIDDIEKIDDYHVAFHLKHKDASFLSN 179

Query: 181 IATSHAVILSLEYANQLIIDDEKEKLDNLPLGTGPFYLAEYHPRDLIRLKRHPQYWEGAA 240
           +AT  AVILS EYA+QL    ++E LD L +GTGPF L +Y   D IR  R+P YW    
Sbjct: 180 LATGFAVILSKEYADQLQRTGQEELLDKLAIGTGPFRLIDYVKNDFIRYYRNPYYWRLTP 239

Query: 241 KVEQVVFDISQRGTGMLAKLLRNECDVLNAPISSQLPAIEKNPDIVLQTTPAMNVAFIAV 300
           +V+Q+VFDI+ + T  LAKL+  +C+V   P + +LP + +  D+ +++ P  NVAF A 
Sbjct: 240 EVDQLVFDITPKSTTRLAKLITGDCNVSALPKAGELPVVIEKEDLEVESLPGFNVAFWAF 299

Query: 301 NTQHPALNDNRVRKALNFAINRQNILDSVYYGTGSIAFTILPPTSWAYQQDTAQIRYDRN 360
           NT+    ND RVR+AL  AI+++NIL +VY  T   A  +LPP SWAY  +   I Y+  
Sbjct: 300 NTERIPFNDVRVRRALAHAIDKENILRAVYQKTAEEAVGLLPPLSWAYSANEKMIDYNPE 359

Query: 361 YAQALLREAGFATGLELTMSVPVEPKA--YNPSPRKTAELIQANLADIGVTLRLISEDRS 418
            A+ LL EAG      LT+ +   P A  YNP+  KTAELIQA+LA+IGV + +++ D S
Sbjct: 360 KARELLDEAGVK---NLTIDIWAMPVARIYNPNAHKTAELIQADLANIGVKVNIVNYDWS 416

Query: 419 ERQELSIRNNIDLYLSGWTGDTGDPDNFLRPLLSCDSNRAGLNVSMWCDSDFDFLLDLAL 478
              +   ++  D  L GW  D  DPDNF  P+LSC S  +  N S WCD  FD +L+ A 
Sbjct: 417 VFNQKLSQHGYDSVLIGWNADNSDPDNFFTPILSCASVGSNSNRSRWCDPAFDHILNAAK 476

Query: 479 EANKPRYRLNLYHQAQNILNQEFPVIPLAHGIQFTAYSKSLTGIRISPF 527
                  R  LY +A+  + ++ P++P AH  +     KS+T  +++PF
Sbjct: 477 STTDREKRARLYQEAEQYVAEQVPMLPFAHATRMVVKQKSVTEAKLTPF 525