Pairwise Alignments

Query, 338 a.a., phage shock protein operon transcriptional activator from Vibrio cholerae E7946 ATCC 55056

Subject, 491 a.a., Flagellar regulatory protein FleQ from Pseudomonas fluorescens FW300-N2E2

 Score =  208 bits (529), Expect = 3e-58
 Identities = 135/347 (38%), Positives = 182/347 (52%), Gaps = 24/347 (6%)

Query: 3   QSLLGESPAFLAVLDKVSRLAPIDRPVLVIGERGTGKELIAQRLHYLSKRWEQPLVSLNC 62
           +SL+G S A   V   + ++A  D  VL++GE GTGKE++A+ LHY SKR E P V +NC
Sbjct: 144 RSLVGTSRAIQHVRQMMQQVADTDASVLILGESGTGKEVVARNLHYHSKRREAPFVPVNC 203

Query: 63  STLSEGLIDSELFGHESGSFTGAKGRHQGRFERAEGGTLFLDELATAPLSVQEKLLRVIE 122
             +   L++SELFGHE G+FTGA     GRFE A GGTLFLDE+   PL +Q KLLRV++
Sbjct: 204 GAIPAELLESELFGHEKGAFTGAITSRAGRFELANGGTLFLDEIGDMPLPMQVKLLRVLQ 263

Query: 123 YGQYERVGGNQVLNANVRLVCATNANLPQMAQQGTFRADLLDRLAFDVIHLPALRHRPED 182
              +ERVG N+  + +VR++ AT+ NL  M + G+FR DL  RL    I +  LR R ED
Sbjct: 264 ERTFERVGSNKTQSVDVRIIAATHKNLESMIEVGSFREDLYYRLNVFPIEMAPLRERVED 323

Query: 183 IALLAEHFAIRMCRELQLPLFVGFSPNALHQLQAYSWPGNVRELKNVVERAVYQHGLNSQ 242
           I LL      RM  E +    + F+  A+  L  + WPGNVREL N+VER    H     
Sbjct: 324 IPLLMNELISRMEHEKRGS--IRFNSAAIMSLCRHGWPGNVRELANLVERMAIMHPYGVI 381

Query: 243 PIDQLVFNPFQSSDIVTDESEQV------DVRHTTRTDFHLP------------LDYKAW 284
            +++L     +    V DE EQ+      D+      + H P            LD K +
Sbjct: 382 GVNELP----KKFRYVDDEDEQMVDSLRSDLEERVAINGHTPDFTANALLPPEGLDLKDY 437

Query: 285 QQQCDIELLQAALTQAKFNQKHAAQLLGLSYHQFRGMMRKYPQMNSE 331
               +  L+Q AL  A      AA+ L +        MRKY     E
Sbjct: 438 LGGLEQGLIQQALDDANGIVARAAERLRIRRTTLVEKMRKYGMSRRE 484