Pairwise Alignments

Query, 338 a.a., phage shock protein operon transcriptional activator from Vibrio cholerae E7946 ATCC 55056

Subject, 476 a.a., response regulator receiver protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  216 bits (551), Expect = 7e-61
 Identities = 135/346 (39%), Positives = 197/346 (56%), Gaps = 28/346 (8%)

Query: 3   QSLLGESPAFLAVLDKVSRLAPIDRPVLVIGERGTGKELIAQRLHYLSKRWEQPLVSLNC 62
           +SL+G S   + V   +S++AP D  VLV+G+ GTGKE++A+ +HYLS+R + P + +NC
Sbjct: 131 RSLVGRSEGIVNVRHLISQVAPSDATVLVLGQSGTGKEVVARNIHYLSERRDGPFIPVNC 190

Query: 63  STLSEGLIDSELFGHESGSFTGAKGRHQGRFERAEGGTLFLDELATAPLSVQEKLLRVIE 122
             +   L++SELFGHE GSFTGA    +GRFE AEGGTLFLDE+   PL++Q KLLRV++
Sbjct: 191 GAIPPELLESELFGHEKGSFTGAISSRKGRFELAEGGTLFLDEIGDMPLAMQVKLLRVLQ 250

Query: 123 YGQYERVGGNQVLNANVRLVCATNANLPQMAQQGTFRADLLDRLAFDVIHLPALRHRPED 182
              +ERVGG++ + ANVR+V AT+ NL  M +   FR DL  RL    I +P+L  R ED
Sbjct: 251 ERVFERVGGSKPIQANVRVVAATHRNLENMIENNEFREDLFYRLNVFPIEMPSLSERCED 310

Query: 183 IALLAEHFAIRMCRELQLPLFVGFSPNALHQLQAYSWPGNVRELKNVVER--AVYQHGL- 239
           I LL +    R+  E +    V F+  A+  L+ + W GNVREL N+VER   +Y  GL 
Sbjct: 311 IPLLLQELVSRVFNEGRGK--VRFTQRAIESLKEHDWSGNVRELSNLVERLTILYPGGLV 368

Query: 240 --NSQPI---------------DQLVFNPFQSSDIVTDESEQVDVRHTTRTDFHLP---L 279
             N  P+               ++++     +S    DE  ++     TR    LP   +
Sbjct: 369 DVNDLPVKYRHIDVPEYCVEVSEEMLERDALASIFNDDEPVEIP---ETRFPSELPPEGV 425

Query: 280 DYKAWQQQCDIELLQAALTQAKFNQKHAAQLLGLSYHQFRGMMRKY 325
           + K    + +I++++ AL Q       AA++LG+        MRKY
Sbjct: 426 NLKDLLAELEIDMIRQALEQQDNVVARAAEMLGIRRTTLVEKMRKY 471