Pairwise Alignments

Query, 338 a.a., phage shock protein operon transcriptional activator from Vibrio cholerae E7946 ATCC 55056

Subject, 533 a.a., Transcriptional Regulator, NifA subfamily, Fis Family (NCBI) from Rhodospirillum rubrum S1H

 Score =  213 bits (541), Expect = 1e-59
 Identities = 131/328 (39%), Positives = 176/328 (53%), Gaps = 29/328 (8%)

Query: 4   SLLGESPAFLAVLDKVSRLAPIDRPVLVIGERGTGKELIAQRLHYLSKRWEQPLVSLNCS 63
           +++G S     V D + ++A     VL++GE G GKEL+A  +HY     E P +  NC+
Sbjct: 219 NIIGTSKPMQEVYDLIHKVAMTKATVLILGESGVGKELVASAIHYNGATAEGPFIKFNCA 278

Query: 64  TLSEGLIDSELFGHESGSFTGAKGRHQGRFERAEGGTLFLDELATAPLSVQEKLLRVIEY 123
            L E L +SELFGHE G+FTGA  + +GRFE A+GGT+FLDE+    L++Q KLLRV++ 
Sbjct: 279 ALPESLGESELFGHEKGAFTGAIAQRKGRFEMADGGTIFLDEVGELSLAMQAKLLRVLQE 338

Query: 124 GQYERVGGNQVLNANVRLVCATNANLPQMAQQGTFRADLLDRLAFDVIHLPALRHRPEDI 183
             +ERVGG + +  +VR++ ATN NLP+M ++GTFR DL  RL    I LP LR R  D+
Sbjct: 339 KTFERVGGGRSVRVDVRIIAATNRNLPEMVEKGTFREDLFYRLNVFPITLPPLRDRGSDV 398

Query: 184 ALLAEHFAIRMCRELQLPLFVGFSPNALHQLQAYSWPGNVRELKNVVERAVYQ------H 237
            LL +HF  R   E         +P AL  L AY WPGNVREL+NV+ER+V        H
Sbjct: 399 ILLVDHFIARHAAEGGREAKRVSTP-ALTMLMAYHWPGNVRELENVIERSVILSEDGVIH 457

Query: 238 GLNSQPIDQLVFNPFQSSDIVTDESEQVDVRHTTRTDFHLPLDYKAWQQQCDIELLQAAL 297
           G N  P                     +     T T F   L+ K   Q  + E++  AL
Sbjct: 458 GYNLPP--------------------SLQTATETGTSFGCGLEAKL--QAVEYEMIVEAL 495

Query: 298 TQAKFNQKHAAQLLGLSYHQFRGMMRKY 325
                N   AA+ LGL+       M KY
Sbjct: 496 KTHGGNATEAAKELGLTRRILGLRMEKY 523