Pairwise Alignments

Query, 338 a.a., phage shock protein operon transcriptional activator from Vibrio cholerae E7946 ATCC 55056

Subject, 460 a.a., Two Component, Sigma54 Specific, Transcriptional Regulator, Fis family (NCBI) from Rhodospirillum rubrum S1H

 Score =  214 bits (545), Expect = 3e-60
 Identities = 112/232 (48%), Positives = 154/232 (66%), Gaps = 1/232 (0%)

Query: 3   QSLLGESPAFLAVLDKVSRLAPIDRPVLVIGERGTGKELIAQRLHYLSKRWEQPLVSLNC 62
           + +L ++P  + +   ++++A     VL+ GE GTGKEL+A  +HY S R   P + +NC
Sbjct: 144 EGILTDNPKMMDLRQTIAKVARSQATVLIQGESGTGKELVAASVHYGSPRATGPFIRVNC 203

Query: 63  STLSEGLIDSELFGHESGSFTGAKGRHQGRFERAEGGTLFLDELATAPLSVQEKLLRVIE 122
           + + EGL++SE FGHE G+FTGA  R +GRFE+AE GTLFLDE+     ++Q KLLRV++
Sbjct: 204 AAIPEGLLESEFFGHEKGAFTGAATRRRGRFEQAEHGTLFLDEIGEISPALQVKLLRVLQ 263

Query: 123 YGQYERVGGNQVLNANVRLVCATNANLPQMAQQGTFRADLLDRLAFDVIHLPALRHRPED 182
             +YERVGG++ + A+VR+V ATN +L  M ++GTFR DL  RL    +    LR RPED
Sbjct: 264 EREYERVGGSEPIPADVRIVAATNRDLEAMIREGTFRQDLFFRLNVVALKTIPLRDRPED 323

Query: 183 IALLAEHFAIRMCRELQLPLFVGFSPNALHQLQAYSWPGNVRELKNVVERAV 234
           I LLA+HF  R   +  + +  GF P AL  + AY WPGNVREL N VERAV
Sbjct: 324 IRLLADHFLGRFAADNNV-VIRGFDPAALDCMLAYPWPGNVRELVNAVERAV 374