Pairwise Alignments

Query, 338 a.a., phage shock protein operon transcriptional activator from Vibrio cholerae E7946 ATCC 55056

Subject, 336 a.a., Sigma54 Specific Transcriptional Regulator containing PAS, and Fis DNA-binding domains (NCBI) from Rhodospirillum rubrum S1H

 Score =  314 bits (804), Expect = 2e-90
 Identities = 172/324 (53%), Positives = 221/324 (68%), Gaps = 5/324 (1%)

Query: 5   LLGESPAFLAVLDKVSRLAPIDRPVLVIGERGTGKELIAQRLHYLSKRWEQPLVSLNCST 64
           ++GE PAFL V+++ SRLAPIDRP LV+GERGTGKEL+A RLHYLS+RW+ PLV +NC+ 
Sbjct: 7   IIGEDPAFLDVIEQASRLAPIDRPCLVVGERGTGKELVAARLHYLSRRWQGPLVKVNCAA 66

Query: 65  LSEGLIDSELFGHESGSFTGAKGRHQGRFERAEGGTLFLDELATAPLSVQEKLLRVIEYG 124
           LS+ L++SELFGHE+G+FTGA+ RH GRFERAEGGTL LDE+A A  +VQEK+LRVIEYG
Sbjct: 67  LSDTLLESELFGHEAGAFTGAQRRHLGRFERAEGGTLILDEIANASQAVQEKVLRVIEYG 126

Query: 125 QYERVGGNQVLNANVRLVCATNANLPQMAQQGTFRADLLDRLAFDVIHLPALRHRPEDIA 184
           + ERVGG   L  +VR++   N +LP+ A +G FRADLLDRLAFDV+ LP LR RP DI 
Sbjct: 127 ELERVGGAATLRVDVRVIGVANVDLPKRAAEGGFRADLLDRLAFDVLTLPPLRARPGDIL 186

Query: 185 LLAEHFAIRMCRELQLPLFVGFSPNALHQLQAYSWPGNVRELKNVVERAVYQHGLNSQPI 244
            LAE FA  M  +L+ P    FSP A  QL  + WPGNVREL+N  ER V +    +  I
Sbjct: 187 ALAEAFARAMAGDLERPA-PAFSPAARAQLLGHGWPGNVRELRNASERTVARLPREATVI 245

Query: 245 DQLVFNPFQSSDIVTDESEQVDVRHTTRTDFHLPLD---YKAWQQQCDIELLQAALTQAK 301
           + +V +PF S   +   +        +  D  LP +   + A     +  LL+ AL  A+
Sbjct: 246 ETVVIDPFASPWCLA-AAPAAPPAILSPADGALPPEGQPFAAAVAAYEQGLLRRALAAAE 304

Query: 302 FNQKHAAQLLGLSYHQFRGMMRKY 325
            NQ  AAQ LGL YHQFR ++ ++
Sbjct: 305 GNQGKAAQALGLGYHQFRRLLARH 328