Pairwise Alignments

Query, 338 a.a., phage shock protein operon transcriptional activator from Vibrio cholerae E7946 ATCC 55056

Subject, 600 a.a., Transcriptional Regulator, NifA, Fis Family (NCBI) from Rhodospirillum rubrum S1H

 Score =  207 bits (527), Expect = 6e-58
 Identities = 112/231 (48%), Positives = 151/231 (65%), Gaps = 2/231 (0%)

Query: 3   QSLLGESPAFLAVLDKVSRLAPIDRPVLVIGERGTGKELIAQRLHYLSKRWEQPLVSLNC 62
           ++++G S A + +  +V ++AP    VL+ GE GTGKELIAQ +HYLS R ++P + +NC
Sbjct: 219 ENVVGRSSAMMKISAQVRQIAPSRATVLLRGESGTGKELIAQAIHYLSPRSDKPFIKVNC 278

Query: 63  STLSEGLIDSELFGHESGSFTGAKGRHQGRFERAEGGTLFLDELATAPLSVQEKLLRVIE 122
           + L E L++SELFGHE G+FTGA    +GRFE A GGTLFLDE+    +  Q KLLRV++
Sbjct: 279 AALPETLLESELFGHEKGAFTGATTERKGRFEMASGGTLFLDEIGEITVHFQAKLLRVLQ 338

Query: 123 YGQYERVGGNQVLNANVRLVCATNANLPQMAQQGTFRADLLDRLAFDVIHLPALRHRPED 182
            G++ERVGG + +  +VRLV ATN +L     +G FRADL  R+    I LPALR R ED
Sbjct: 339 EGEFERVGGGKTIKVDVRLVAATNKDLEDAVTRGEFRADLYYRINVVPIFLPALRERRED 398

Query: 183 IALLAEHFAIRMCRELQLPLFVGFSPNALHQLQAYSWPGNVRELKNVVERA 233
           + LLA+ F  +   E    L   FS  AL  +   ++PGNVREL+N V RA
Sbjct: 399 VPLLAQFFLTKFNEENGRSL--RFSEGALTAMGGCNFPGNVRELENCVCRA 447