Pairwise Alignments

Query, 338 a.a., phage shock protein operon transcriptional activator from Vibrio cholerae E7946 ATCC 55056

Subject, 584 a.a., nif-specific transcriptional activator NifA from Rhodopseudomonas palustris CGA009

 Score =  207 bits (528), Expect = 4e-58
 Identities = 115/228 (50%), Positives = 147/228 (64%), Gaps = 2/228 (0%)

Query: 5   LLGESPAFLAVLDKVSRLAPIDRPVLVIGERGTGKELIAQRLHYLSKRWEQPLVSLNCST 64
           ++GESPA   +L KVS +A    PVL+ GE GTGKELIA+ +H LS R   P + +NC+ 
Sbjct: 229 IVGESPAIRKLLAKVSIIAKSQSPVLLRGESGTGKELIAKAIHELSARANGPFIKINCAA 288

Query: 65  LSEGLIDSELFGHESGSFTGAKGRHQGRFERAEGGTLFLDELATAPLSVQEKLLRVIEYG 124
           L E +++SELFGHE G+FTGA    +GRFE A+ GTLFLDE+     S Q KLLRV++  
Sbjct: 289 LPESVLESELFGHEKGAFTGAIASRKGRFELADKGTLFLDEIGEISASFQAKLLRVLQEQ 348

Query: 125 QYERVGGNQVLNANVRLVCATNANLPQMAQQGTFRADLLDRLAFDVIHLPALRHRPEDIA 184
           ++ERVGGNQ +  NVR+V ATN NL +   +  FRADL  R+    + LP LR RP DI 
Sbjct: 349 EFERVGGNQTIKVNVRIVAATNRNLEEAVARKEFRADLYYRINVVPMILPPLRDRPSDIP 408

Query: 185 LLAEHFAIRMCRELQLPLFVGFSPNALHQLQAYSWPGNVRELKNVVER 232
           LLA  F     +E    L   F  +AL  L+A S+PGNVREL+N V R
Sbjct: 409 LLASEFLKNFNKENGREL--AFESHALDLLKACSFPGNVRELENCVRR 454