Pairwise Alignments

Query, 338 a.a., phage shock protein operon transcriptional activator from Vibrio cholerae E7946 ATCC 55056

Subject, 641 a.a., sigma 54-interacting transcriptional regulator from Rhodopseudomonas palustris CGA009

 Score =  207 bits (528), Expect = 5e-58
 Identities = 111/231 (48%), Positives = 147/231 (63%), Gaps = 2/231 (0%)

Query: 3   QSLLGESPAFLAVLDKVSRLAPIDRPVLVIGERGTGKELIAQRLHYLSKRWEQPLVSLNC 62
           + ++G+S A    L +V  +AP    VL+ GE GTGKELIA+ +H  S R ++PL+ +NC
Sbjct: 319 RGIIGQSEAIQTTLRQVKLVAPTAATVLITGESGTGKELIARAIHEASTRRDRPLIRVNC 378

Query: 63  STLSEGLIDSELFGHESGSFTGAKGRHQGRFERAEGGTLFLDELATAPLSVQEKLLRVIE 122
           + +   L +SE FGH  G+FTGA     GRFE A+GGTLFLDE+   PL +Q KLLRV++
Sbjct: 379 AAIPRELFESEFFGHARGAFTGAVRDRIGRFELADGGTLFLDEVGEIPLELQSKLLRVLQ 438

Query: 123 YGQYERVGGNQVLNANVRLVCATNANLPQMAQQGTFRADLLDRLAFDVIHLPALRHRPED 182
            G +ERVG  +  N +VRL+ ATN +L +  Q+G FR DL  RL+   I    LR R ED
Sbjct: 439 EGNFERVGEERTRNVDVRLIAATNRDLKREVQRGHFREDLYFRLSVFPIESVPLRDRRED 498

Query: 183 IALLAEHFAIRMCRELQLPLFVGFSPNALHQLQAYSWPGNVRELKNVVERA 233
           I LLA+HF     REL+  L    S   + +L  Y WPGNVREL+NV+ERA
Sbjct: 499 IPLLAQHFLTNEARELKTEL--RLSQGDVRRLMRYDWPGNVRELQNVIERA 547