Pairwise Alignments

Query, 338 a.a., phage shock protein operon transcriptional activator from Vibrio cholerae E7946 ATCC 55056

Subject, 356 a.a., sigma-54 dependent trancsriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  387 bits (993), Expect = e-112
 Identities = 197/345 (57%), Positives = 253/345 (73%), Gaps = 21/345 (6%)

Query: 2   QQSLLGESPAFLAVLDKVSRLAPIDRPVLVIGERGTGKELIAQRLHYLSKRWEQPLVSLN 61
           Q +L+G+S A L VL+ VS++AP+ +PVL+IGERGTGKELIA+RLHYLSKRW+Q  + LN
Sbjct: 7   QDNLIGQSNALLEVLEHVSKIAPLSKPVLIIGERGTGKELIAERLHYLSKRWDQSFIKLN 66

Query: 62  CSTLSEGLIDSELFGHESGSFTGAKGRHQGRFERAEGGTLFLDELATAPLSVQEKLLRVI 121
           CS+LSE L++SELFGH++G+FTGA  +H+GRFERA+GGTLFLDELA     +QEKLLRVI
Sbjct: 67  CSSLSENLLESELFGHDAGAFTGANKKHEGRFERADGGTLFLDELANTSGLIQEKLLRVI 126

Query: 122 EYGQYERVGGNQVLNANVRLVCATNANLPQMAQQGTFRADLLDRLAFDVIHLPALRHRPE 181
           EYG++ERVGG++ +  +VRLVCA N +LP +A+ G FRADLLDRLAFDVI LP LRHRPE
Sbjct: 127 EYGEFERVGGSKTVQTDVRLVCAANEDLPSLAEAGEFRADLLDRLAFDVITLPPLRHRPE 186

Query: 182 DIALLAEHFAIRMCRELQLPLFVGFSPNALHQLQAYSWPGNVRELKNVVERAVYQHGLNS 241
           DI  LAE+FAI M R+L+ P F GFS NA+ QL  Y WPGN+RELKNVVERAVY++    
Sbjct: 187 DIMPLAEYFAIGMARQLKQPQFDGFSRNAIDQLLDYHWPGNIRELKNVVERAVYRNTDQE 246

Query: 242 QPIDQLVFNPFQSSDIVTD---------ESEQVDVRHTTRT------------DFHLPLD 280
           +PID ++ +PF S    T+         +SEQ   + +  T            D   PLD
Sbjct: 247 EPIDSIIIDPFASPYRPTNRVKTKSRQVQSEQAVEQESPATPATESASKANGLDISFPLD 306

Query: 281 YKAWQQQCDIELLQAALTQAKFNQKHAAQLLGLSYHQFRGMMRKY 325
           +K   +Q +I LL+ AL   ++NQK  A+LLGLSYHQ RG+++KY
Sbjct: 307 FKEHCEQQEILLLKKALESGQYNQKKTAELLGLSYHQLRGILKKY 351