Pairwise Alignments

Query, 338 a.a., phage shock protein operon transcriptional activator from Vibrio cholerae E7946 ATCC 55056

Subject, 507 a.a., Fis family transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  206 bits (523), Expect = 1e-57
 Identities = 115/279 (41%), Positives = 164/279 (58%), Gaps = 8/279 (2%)

Query: 5   LLGESPAFLAVLDKVSRLAPIDRPVLVIGERGTGKELIAQRLHYLSKRWEQPLVSLNCST 64
           ++G       V+ +V  +A +   VL++GE G GKE+IA  +H  S+R ++P + +NC  
Sbjct: 189 VIGADSGLKRVMTQVEAIAKLHTSVLILGETGCGKEVIANAVHCKSQRADKPFIKVNCGA 248

Query: 65  LSEGLIDSELFGHESGSFTGAKGRHQGRFERAEGGTLFLDELATAPLSVQEKLLRVIEYG 124
           + E LIDSELFG+E G+FTGA+ R  G FE+A GGT+FLDE+   PLSVQ +LLRV++ G
Sbjct: 249 IPESLIDSELFGYEKGAFTGAEHRKAGFFEQANGGTIFLDEIGELPLSVQVRLLRVLQNG 308

Query: 125 QYERVGGNQVLNANVRLVCATNANLPQMAQQGTFRADLLDRLAFDVIHLPALRHRPEDIA 184
              RVGG   +N ++R++ AT+ NL  M ++ TFR DL  RLA   I +P+LR R  DI 
Sbjct: 309 TITRVGGFDAINLDIRVIAATHRNLQAMVKKQTFREDLWYRLAVFPIEIPSLRQRRSDIP 368

Query: 185 LLAEHFAIRMCRELQLPLFVGFSPNALHQLQAYSWPGNVRELKNVVERAVYQHGLNSQPI 244
           LL +HF   +  +  L      S   L  L  Y WPGNVREL NV+ERA+ +      P 
Sbjct: 369 LLVQHFIEVLAAKFNLDKLPRVSSEQLDSLNHYHWPGNVRELINVLERAMIE-----APE 423

Query: 245 DQLVFNPFQSSDI---VTDESEQVDVRHTTRTDFHLPLD 280
             L FN  Q   +    + + E + +  +  +D  +PLD
Sbjct: 424 GPLNFNLTQVDKVEPAASGKHETIIIDPSHASDKLVPLD 462