Pairwise Alignments

Query, 338 a.a., phage shock protein operon transcriptional activator from Vibrio cholerae E7946 ATCC 55056

Subject, 601 a.a., sigma54 specific transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  214 bits (546), Expect = 3e-60
 Identities = 114/235 (48%), Positives = 150/235 (63%), Gaps = 9/235 (3%)

Query: 4   SLLGESPAFLAVLDKVSRLAPIDRPVLVIGERGTGKELIAQRLHYLSKRWEQPLVSLNCS 63
           S++G+SP     L++V  +AP D  VL++GE GTGKEL+AQ +H  S+R   PLV +NCS
Sbjct: 247 SIVGDSPPLRRALEQVDMVAPTDATVLLLGESGTGKELVAQAIHDRSQRAAAPLVRVNCS 306

Query: 64  TLSEGLIDSELFGHESGSFTGAKGRHQGRFERAEGGTLFLDELATAPLSVQEKLLRVIEY 123
            +   L +SE FGH  G+FTGA     GRF+ A+GGTLFLDE+   PL +Q KLLRV++ 
Sbjct: 307 AIPRELFESEFFGHVKGAFTGALRDRVGRFQLADGGTLFLDEVGEIPLELQGKLLRVLQE 366

Query: 124 GQYERVGGNQVLNANVRLVCATNANLPQMAQQGTFRADLLDRLAFDVIHLPALRHRPEDI 183
           G +ERVG  +  + +VR++ ATN +L    + G FR DL  RL+   + LP LR R +DI
Sbjct: 367 GVFERVGEERSRSVDVRIIAATNRDLRADVEHGRFRQDLFFRLSVFPVALPPLRARRDDI 426

Query: 184 ALLAEHFAIRMCRELQLPLFVGFSPNALH----QLQAYSWPGNVRELKNVVERAV 234
            LLA HF    CR L LP      P   H    +LQ+Y WPGNVREL+NV+ER V
Sbjct: 427 PLLARHFVRASCRRLNLP-----EPRIAHRQMAELQSYPWPGNVRELQNVIERGV 476