Pairwise Alignments

Query, 338 a.a., phage shock protein operon transcriptional activator from Vibrio cholerae E7946 ATCC 55056

Subject, 477 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  214 bits (545), Expect = 4e-60
 Identities = 109/230 (47%), Positives = 155/230 (67%), Gaps = 1/230 (0%)

Query: 5   LLGESPAFLAVLDKVSRLAPIDRPVLVIGERGTGKELIAQRLHYLSKRWEQPLVSLNCST 64
           ++G S     +++ ++ +AP +  VL+ GE GTGKEL+A+ LH  S R  +PLV++NC+ 
Sbjct: 150 IIGRSAPMHELVEMIATVAPSEATVLITGESGTGKELVARALHAASHRSAKPLVTVNCAA 209

Query: 65  LSEGLIDSELFGHESGSFTGAKGRHQGRFERAEGGTLFLDELATAPLSVQEKLLRVIEYG 124
           L+E L++SELFGHE G+FTGA  R +GRF +A+GGTLFLDE+   PL++Q KLLR ++ G
Sbjct: 210 LTETLLESELFGHERGAFTGADRRREGRFVQADGGTLFLDEIGEMPLTLQAKLLRALQQG 269

Query: 125 QYERVGGNQVLNANVRLVCATNANLPQMAQQGTFRADLLDRLAFDVIHLPALRHRPEDIA 184
           + +RVG +  L  +VR++ ATN +L + A  G FR DL  RL    +H+PALR R  D+ 
Sbjct: 270 EVQRVGSDTPLTVDVRVIAATNRDLREEAAAGRFREDLYYRLNVIAVHVPALRERAGDVP 329

Query: 185 LLAEHFAIRMCRELQLPLFVGFSPNALHQLQAYSWPGNVRELKNVVERAV 234
           LLA  F  R   + +  L  GF+P A+  L  + WPGNVREL+N +ERAV
Sbjct: 330 LLAAFFLDRYTEKNRKHL-KGFTPQAMDMLLRHDWPGNVRELENAIERAV 378