Pairwise Alignments

Query, 338 a.a., phage shock protein operon transcriptional activator from Vibrio cholerae E7946 ATCC 55056

Subject, 486 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  206 bits (524), Expect = 1e-57
 Identities = 131/337 (38%), Positives = 185/337 (54%), Gaps = 17/337 (5%)

Query: 3   QSLLGESPAFLAVLDKVSRLAPIDRPVLVIGERGTGKELIAQRLHYLSKRWEQPLVSLNC 62
           ++L+G S A   V   + R AP D  VLV GE GTGKEL+A+ ++  S R E+P + +NC
Sbjct: 144 EALVGTSRAMHQVYKAIGRAAPTDALVLVRGESGTGKELVARAVYQHSLRGEKPFLIINC 203

Query: 63  STLSEGLIDSELFGHESGSFTGAKGRHQGRFERAEGGTLFLDELATAPLSVQEKLLRVIE 122
             + + L++SELFG+E G+FTGA  R  G+ E+A GGT+FLDE+   PL +Q KLLR+++
Sbjct: 204 VAIPDTLLESELFGYEKGAFTGATNRRVGKIEQANGGTVFLDEIGDMPLGIQAKLLRLLQ 263

Query: 123 YGQYERVGGNQVLNANVRLVCATNANLPQMAQQGTFRADLLDRLAFDVIHLPALRHRPED 182
             Q ER+GG Q +  +VR++ ATN +L      G FR DL  RL    + LP LR R ED
Sbjct: 264 EKQIERLGGRQPIPVDVRIIAATNTDLEAAVADGRFREDLYYRLKVVTLWLPPLRERSED 323

Query: 183 IALLAEHFAIRMCRELQLPLFVGFSPNALHQLQAYSWPGNVRELKNVVERA-VYQHG--L 239
           I  LA +F  R  RE+ +P   G +P AL  L+A  WPGNVREL N V +A V+  G  L
Sbjct: 324 IPPLARYFLARFSREMDMP-NPGITPEALAYLEAQPWPGNVRELGNSVHKALVFSRGGPL 382

Query: 240 NSQPIDQLV----------FNPFQSSDIVTDESEQVDVRHT-TRTDFHLPLDYKAWQQQC 288
               + Q +            P     +  D++ Q  +R T + +D     D  +     
Sbjct: 383 GEPDLKQALEASRGVRPGSEGPACDLSLAADQTMQELIRRTLSESDGDNVFD--SLMDHV 440

Query: 289 DIELLQAALTQAKFNQKHAAQLLGLSYHQFRGMMRKY 325
              +++ AL     N+  AA+LLGLS       + KY
Sbjct: 441 GRLVVREALHLTGGNRTRAARLLGLSRPTLLAKIEKY 477