Pairwise Alignments

Query, 338 a.a., phage shock protein operon transcriptional activator from Vibrio cholerae E7946 ATCC 55056

Subject, 434 a.a., sigma54 specific transcriptional acivator, PspF, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  279 bits (714), Expect = 8e-80
 Identities = 139/229 (60%), Positives = 172/229 (75%)

Query: 6   LGESPAFLAVLDKVSRLAPIDRPVLVIGERGTGKELIAQRLHYLSKRWEQPLVSLNCSTL 65
           +G+S AFLA  + +SR+A +DRPVL+ GERGTGKEL A RLHYLS RW+ PLV L+C+ L
Sbjct: 17  IGQSDAFLAFQEALSRVARVDRPVLLAGERGTGKELAAARLHYLSPRWQGPLVVLDCAAL 76

Query: 66  SEGLIDSELFGHESGSFTGAKGRHQGRFERAEGGTLFLDELATAPLSVQEKLLRVIEYGQ 125
           +  L ++ELFGHE+G+FTGA  R  GRFERA+GGTLFLDE+   P  VQ+KLLRV+EYG 
Sbjct: 77  APTLAEAELFGHEAGAFTGAAARRAGRFERADGGTLFLDEVGNIPAGVQDKLLRVVEYGM 136

Query: 126 YERVGGNQVLNANVRLVCATNANLPQMAQQGTFRADLLDRLAFDVIHLPALRHRPEDIAL 185
            ERVGG Q +  + R+V ATNA+LP M  +G FRADLLDRL+F+V+ +P LR R +D+ L
Sbjct: 137 LERVGGTQPVRVDARVVAATNADLPAMVARGLFRADLLDRLSFEVLAVPPLRERGDDVIL 196

Query: 186 LAEHFAIRMCRELQLPLFVGFSPNALHQLQAYSWPGNVRELKNVVERAV 234
           LA HFA  M  EL LP     +P AL QL A+ WPGNVREL+N VERAV
Sbjct: 197 LARHFAASMAAELDLPDTPELAPAALAQLLAHPWPGNVRELRNAVERAV 245



 Score = 45.8 bits (107), Expect = 2e-09
 Identities = 20/42 (47%), Positives = 33/42 (78%)

Query: 286 QQCDIELLQAALTQAKFNQKHAAQLLGLSYHQFRGMMRKYPQ 327
           +Q ++  L+AAL +A+ N++ AA+LLG+SY QFRG+ R++ Q
Sbjct: 389 RQLELSALRAALDRARHNRRVAAELLGISYDQFRGLYRRHRQ 430