Pairwise Alignments

Query, 338 a.a., phage shock protein operon transcriptional activator from Vibrio cholerae E7946 ATCC 55056

Subject, 491 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  207 bits (526), Expect = 6e-58
 Identities = 108/231 (46%), Positives = 148/231 (64%), Gaps = 1/231 (0%)

Query: 7   GESPAFLAVLDKVSRLAPIDRPVLVIGERGTGKELIAQRLHYLSKRWEQPLVSLNCSTLS 66
           G SP    +  +++R+AP D  VL+ GE GTGKEL A+ +H  S+R ++PLV++NC+ + 
Sbjct: 144 GRSPVMETLRGQIARVAPTDAWVLITGENGTGKELAARAIHAGSRRADRPLVAVNCAAIP 203

Query: 67  EGLIDSELFGHESGSFTGAKGRHQGRFERAEGGTLFLDELATAPLSVQEKLLRVIEYGQY 126
           E LI+SELFGHE G+FTGA     G+FE A  GTLFLDE+    L  Q K+LR+++  Q+
Sbjct: 204 EELIESELFGHEKGAFTGADSAKAGKFEMAHKGTLFLDEIGDMSLKTQAKILRILQEQQF 263

Query: 127 ERVGGNQVLNANVRLVCATNANLPQMAQQGTFRADLLDRLAFDVIHLPALRHRPEDIALL 186
           ERVGG++ +  +VR++ ATN NL      GTFR DL  RL    + LP LR R  D+ LL
Sbjct: 264 ERVGGHRTMRVDVRVIAATNKNLEDEIAAGTFREDLYYRLRVFPLVLPPLREREGDVPLL 323

Query: 187 AEHFAIRMCRELQLPLFVGFSPNALHQLQAYSWPGNVRELKNVVERAVYQH 237
            + FA R+ R+  +     F+P+A   L  Y WPGNVREL+N VER +  H
Sbjct: 324 IDLFAQRLARDYGVRP-ATFAPDAQEALARYPWPGNVRELRNFVERMLILH 373