Pairwise Alignments

Query, 338 a.a., phage shock protein operon transcriptional activator from Vibrio cholerae E7946 ATCC 55056

Subject, 452 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  207 bits (528), Expect = 3e-58
 Identities = 114/229 (49%), Positives = 147/229 (64%), Gaps = 2/229 (0%)

Query: 6   LGESPAFLAVLDKVSRLAPIDRPVLVIGERGTGKELIAQRLHYLSKRWEQPLVSLNCSTL 65
           +GESP  L V +++  +A    PVLV+G  G+GKEL+A  LH LSKR ++P + +NC+ L
Sbjct: 141 IGESPMMLKVFERIRAIAGSCVPVLVLGPSGSGKELVAGALHRLSKRRDKPFIKINCAAL 200

Query: 66  SEGLIDSELFGHESGSFTGAKGRHQGRFERAEGGTLFLDELATAPLSVQEKLLRVIEYGQ 125
            E L++SELFGHE G+FTGA+   +G+FE A+GGTLF DE    PL+VQ KLLRV+E  +
Sbjct: 201 PEHLLESELFGHEKGAFTGAQQARKGKFEAADGGTLFFDEAGEMPLAVQAKLLRVLEDQE 260

Query: 126 YERVGGNQVLNANVRLVCATNANLPQMAQQGTFRADLLDRLAFDVIHLPALRHRPEDIAL 185
              VGGN     +VR V AT  +L +    GTFR DL  R+    + LP LR R  D+AL
Sbjct: 261 VTPVGGNMPRKVDVRTVFATARDLEEAIGAGTFREDLYYRINVVPVTLPPLRERGGDVAL 320

Query: 186 LAEHFAIRMCRELQLPLFVGFSPNALHQLQAYSWPGNVRELKNVVERAV 234
           LAE F  R C   Q    V FS  A + L AY +PGNVREL+N +ERAV
Sbjct: 321 LAERFLRRFC--AQHDRQVTFSEQARNALLAYDYPGNVRELRNAIERAV 367