Pairwise Alignments

Query, 338 a.a., phage shock protein operon transcriptional activator from Vibrio cholerae E7946 ATCC 55056

Subject, 456 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  211 bits (537), Expect = 3e-59
 Identities = 109/230 (47%), Positives = 153/230 (66%), Gaps = 1/230 (0%)

Query: 5   LLGESPAFLAVLDKVSRLAPIDRPVLVIGERGTGKELIAQRLHYLSKRWEQPLVSLNCST 64
           ++G+S +   ++D ++ +AP +  VLV GE GTGKELIA+ +H  S+R   P V++NC+ 
Sbjct: 147 IIGQSQSMHRLMDMMASIAPSEATVLVTGESGTGKELIARAIHANSQRRHGPYVTVNCAA 206

Query: 65  LSEGLIDSELFGHESGSFTGAKGRHQGRFERAEGGTLFLDELATAPLSVQEKLLRVIEYG 124
           L+E L++SELFGHE G+FTGA+ R +GRF+ A+ GT+FLDE+    L +Q KLLR I+  
Sbjct: 207 LTETLLESELFGHEKGAFTGAEKRREGRFQSADKGTIFLDEIGETSLPMQAKLLRAIQER 266

Query: 125 QYERVGGNQVLNANVRLVCATNANLPQMAQQGTFRADLLDRLAFDVIHLPALRHRPEDIA 184
           + +RVG +Q L  +VR++ ATN +L    + G FR DL  RL    +H+P LR R EDI 
Sbjct: 267 EIQRVGSDQTLRVDVRIIAATNRDLRAEVEAGRFRQDLYYRLNVVTLHVPPLRERVEDIP 326

Query: 185 LLAEHFAIRMCRELQLPLFVGFSPNALHQLQAYSWPGNVRELKNVVERAV 234
           LLA HF +R   E       GF+P A+ +L  + WPGNVREL+N  ERAV
Sbjct: 327 LLAGHF-LRRFTEKNGKRVKGFTPQAMDRLLKHDWPGNVRELENAAERAV 375