Pairwise Alignments

Query, 338 a.a., phage shock protein operon transcriptional activator from Vibrio cholerae E7946 ATCC 55056

Subject, 462 a.a., two component, sigma54 specific, transcriptional regulator, Fis family from Marinobacter adhaerens HP15

 Score =  204 bits (518), Expect = 5e-57
 Identities = 117/325 (36%), Positives = 188/325 (57%), Gaps = 9/325 (2%)

Query: 5   LLGESPAFLAVLDKVSRLAPIDRPVLVIGERGTGKELIAQRLHYLSKRWEQPLVSLNCST 64
           LLG+SP    + ++  +LA    PV + GE G+GKEL+A+ +H    R E P +++NC  
Sbjct: 138 LLGKSPEIRKLRNQTRKLARSQAPVFISGESGSGKELVARMIHLQGPRREGPFIAVNCGA 197

Query: 65  LSEGLIDSELFGHESGSFTGAKGRHQGRFERAEGGTLFLDELATAPLSVQEKLLRVIEYG 124
           +   L++SE FGH+ GSFTGA     G F  A GGTLFLDE+A  PL++Q KLLR I+  
Sbjct: 198 IPSELMESEFFGHKKGSFTGAVENKDGLFRSANGGTLFLDEVADLPLAMQVKLLRAIQEK 257

Query: 125 QYERVGGNQVLNANVRLVCATNANLPQMAQQGTFRADLLDRLAFDVIHLPALRHRPEDIA 184
               VG  + +  ++R++ AT+ NLP++ Q+G+FR DL  R+    + +P LR RP+DI+
Sbjct: 258 AVRPVGDTKEVPVDIRVLSATHKNLPELVQEGSFRQDLFYRINVIELSVPPLRERPDDIS 317

Query: 185 LLAEHFAIRMCRELQLPLFVGFSPNALHQLQAYSWPGNVRELKNVVERAVYQHGLNSQPI 244
           LL+ H   R+ +E +       +P A+ +L++Y +PGNVREL+NV+ERA      +    
Sbjct: 318 LLSNHILERIAKEYECDP-ASLTPAAVDRLRSYDFPGNVRELENVLERAFTLCDADQIDA 376

Query: 245 DQL-----VFNPFQSSDIVTDESEQVDVRHTTRTDFHLPLDYKAWQQQCDIELLQAALTQ 299
           D L     V +   +S I+  E +  D       D    +D + + ++ + + ++ AL  
Sbjct: 377 DDLHLGNGVQHAASASQIIA-EGQVGDGEGIAVPDGE--IDLEGYLEKIERQAIEKALEA 433

Query: 300 AKFNQKHAAQLLGLSYHQFRGMMRK 324
            ++N+  AA+ LG+S+   R  ++K
Sbjct: 434 TRWNKTAAAKRLGISFRALRYRLKK 458