Pairwise Alignments

Query, 338 a.a., phage shock protein operon transcriptional activator from Vibrio cholerae E7946 ATCC 55056

Subject, 477 a.a., flagellar regulatory protein A (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  214 bits (544), Expect = 5e-60
 Identities = 133/343 (38%), Positives = 195/343 (56%), Gaps = 22/343 (6%)

Query: 3   QSLLGESPAFLAVLDKVSRLAPIDRPVLVIGERGTGKELIAQRLHYLSKRWEQPLVSLNC 62
           +SL+G S     V   +S++A  D  VLV+G+ GTGKE++A+ +HYLS+R + P + +NC
Sbjct: 132 RSLVGRSDGIANVRHLISQVATSDATVLVLGQSGTGKEVVARNIHYLSERRDGPFIPVNC 191

Query: 63  STLSEGLIDSELFGHESGSFTGAKGRHQGRFERAEGGTLFLDELATAPLSVQEKLLRVIE 122
             +   L++SELFGHE GSFTGA    +GRFE AEGGTLFLDE+   PL +Q KLLRV++
Sbjct: 192 GAIPPELLESELFGHEKGSFTGAISSRKGRFELAEGGTLFLDEIGDMPLQMQVKLLRVLQ 251

Query: 123 YGQYERVGGNQVLNANVRLVCATNANLPQMAQQGTFRADLLDRLAFDVIHLPALRHRPED 182
              +ERVGG + +NA+VR+V AT+ +L  M     FR DL  RL    I +PAL  R +D
Sbjct: 252 ERVFERVGGTKTINADVRVVAATHRDLETMISSNEFREDLYYRLNVFPIEMPALSERKDD 311

Query: 183 IALLAEHFAIRMCRELQLPLFVGFSPNALHQLQAYSWPGNVRELKNVVER--AVYQHGL- 239
           + LL +    R+  E +    V F+  A+  L+ ++W GNVREL N+VER   +Y  GL 
Sbjct: 312 VPLLLQELVSRVYNEGRGK--VRFTQRAIESLKEHAWSGNVRELSNLVERLTILYPGGLV 369

Query: 240 --NSQPIDQLVFNPFQSSDIVTDESEQVDVRHT------------TRTDFHLP---LDYK 282
             N  PI     +  + S  +++E ++ D   +            TR    LP   ++ K
Sbjct: 370 DVNDLPIKYRHIDVPEYSVELSEEQQERDALASIFTSEEPVEIPETRFPSELPPEGVNLK 429

Query: 283 AWQQQCDIELLQAALTQAKFNQKHAAQLLGLSYHQFRGMMRKY 325
               + +I++++ AL Q       AA++LG+        MRKY
Sbjct: 430 DLLAELEIDMIRQALEQQDNVVARAAEMLGIRRTTLVEKMRKY 472