Pairwise Alignments

Query, 338 a.a., phage shock protein operon transcriptional activator from Vibrio cholerae E7946 ATCC 55056

Subject, 508 a.a., formate hydrogenlyase transcriptional activator, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  221 bits (563), Expect = 3e-62
 Identities = 125/325 (38%), Positives = 188/325 (57%), Gaps = 7/325 (2%)

Query: 1   MQQSLLGESPAFLAVLDKVSRLAPIDRPVLVIGERGTGKELIAQRLHYLSKRWEQPLVSL 60
           +Q  ++G +     V+ +V  +A I+  VL++GE G GKE+IA  +H LS+R  +P + +
Sbjct: 186 VQNGVVGANSGLKQVMQQVQSIAKINTTVLMLGETGCGKEVIANAIHELSERAGKPFIKV 245

Query: 61  NCSTLSEGLIDSELFGHESGSFTGAKGRHQGRFERAEGGTLFLDELATAPLSVQEKLLRV 120
           NC  + + LIDSELFG+E G+FTGA+ R  G FE+A GGT+FLDE+   PLS Q +LLRV
Sbjct: 246 NCGAIPDTLIDSELFGYEKGAFTGAESRKIGYFEQANGGTIFLDEIGELPLSAQVRLLRV 305

Query: 121 IEYGQYERVGGNQVLNANVRLVCATNANLPQMAQQGTFRADLLDRLAFDVIHLPALRHRP 180
           ++     RVGG+  +  ++R++ AT+ NL  M  +  FR DL  RLA   I +P+LR R 
Sbjct: 306 LQNSCITRVGGHDAVQLDIRIIAATHRNLQAMVHREVFREDLWYRLAIFPIEIPSLRQRR 365

Query: 181 EDIALLAEHFAIRMCRELQLPLFVGFSPNALHQLQAYSWPGNVRELKNVVERAVYQHGLN 240
            DI LL +HF  ++  +  LP     +P+ L+ L  Y WPGNVREL NV+ERA+ QH   
Sbjct: 366 TDIPLLVQHFIEQLSAKFNLPQLPRIAPDQLNILNQYGWPGNVRELINVLERAMIQH--P 423

Query: 241 SQPIDQLVFNPFQSSDIVTDESEQVDVRHTTRTDFHLPLDYKAWQQQCDIELLQAALTQA 300
           + P+D     P    ++ T  ++ V +  +  TD  +PLD    +           +T  
Sbjct: 424 AGPLDFRFLAPQSCEEVKTPSNQTVIIDPSHATDKLVPLDVMTKKYISH----ALRITGG 479

Query: 301 K-FNQKHAAQLLGLSYHQFRGMMRK 324
           K +    AA+LL ++ +  R  M+K
Sbjct: 480 KLYGPGGAAELLDINANTLRSKMKK 504