Pairwise Alignments

Query, 338 a.a., phage shock protein operon transcriptional activator from Vibrio cholerae E7946 ATCC 55056

Subject, 524 a.a., nif-specific transcriptional activator NifA from Klebsiella michiganensis M5al

 Score =  207 bits (528), Expect = 4e-58
 Identities = 128/317 (40%), Positives = 179/317 (56%), Gaps = 19/317 (5%)

Query: 3   QSLLGESPAFLAVLDKVSRLAPIDRPVLVIGERGTGKELIAQRLHYLSKRWEQPLVSLNC 62
           ++++G+SPA   ++D + +++  D  VLV GE GTGKELIA  +H+ S R     V  NC
Sbjct: 210 ENMVGKSPAMRQIMDIIRQVSRWDTTVLVRGESGTGKELIANAIHHNSPRAAAAFVKFNC 269

Query: 63  STLSEGLIDSELFGHESGSFTGAKGRHQGRFERAEGGTLFLDELATAPLSVQEKLLRVIE 122
           + L + L++SELFGHE G+FTGA  + +GRFE A+GGTLFLDE+  +  S Q KLLR+++
Sbjct: 270 AALPDNLLESELFGHEKGAFTGAVRQRKGRFELADGGTLFLDEIGESSASFQAKLLRILQ 329

Query: 123 YGQYERVGGNQVLNANVRLVCATNANLPQMAQQGTFRADLLDRLAFDVIHLPALRHRPED 182
            G+ ERVGG++ L  NVR++ ATN +L +  + G FR DL  RL    I LP LR R ED
Sbjct: 330 EGEMERVGGDETLRVNVRIIAATNRHLEEEVRLGHFREDLYYRLNVMPIALPPLRERQED 389

Query: 183 IALLAEHFAIRMCRELQLPLFVGFSPNALHQLQAYSWPGNVRELKNVVERAVYQHGLNSQ 242
           IA LA HF +R     Q    +  S  A+  L  YSWPGNVREL+N +ER+         
Sbjct: 390 IAELA-HFLVRKIAHSQ-GRTLRISDGAIRLLMEYSWPGNVRELENCLERSAVLSESGLI 447

Query: 243 PIDQLVFNPFQSSDIVTDESEQVDVRHTTRTDFHLPLDYKAWQQQC--DIELLQAALTQA 300
             D ++FN   +       S   +                 W      + + L AAL +A
Sbjct: 448 DRDVILFNHRDNPPKALASSGPAE---------------DGWLDNSLDERQRLIAALEKA 492

Query: 301 KFNQKHAAQLLGLSYHQ 317
            + Q  AA+LLG++  Q
Sbjct: 493 GWVQAKAARLLGMTPRQ 509