Pairwise Alignments

Query, 338 a.a., phage shock protein operon transcriptional activator from Vibrio cholerae E7946 ATCC 55056

Subject, 459 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  231 bits (589), Expect = 3e-65
 Identities = 133/321 (41%), Positives = 190/321 (59%), Gaps = 11/321 (3%)

Query: 5   LLGESPAFLAVLDKVSRLAPIDRPVLVIGERGTGKELIAQRLHYLSKRWEQPLVSLNCST 64
           ++G S A   VLD V R AP    VL+ GE GTGKEL+A+ +H+ S R   P VS+NC  
Sbjct: 145 IIGRSKAIREVLDMVDRAAPSRSTVLITGESGTGKELVARAIHFSSPRNSGPFVSVNCMA 204

Query: 65  LSEGLIDSELFGHESGSFTGAKGRHQGRFERAEGGTLFLDELATAPLSVQEKLLRVIEYG 124
           L+ G+++SELFGHE GSFTGA    +GRFE+A+GGTLFLDE+      +Q KLLRV++  
Sbjct: 205 LNPGVLESELFGHEKGSFTGAMAMRRGRFEQADGGTLFLDEIGELTPELQVKLLRVLQER 264

Query: 125 QYERVGGNQVLNANVRLVCATNANLPQMAQQGTFRADLLDRLAFDVIHLPALRHRPEDIA 184
           ++ERVGG   +  ++R+V ATN +L +  + GTFR DL  RL    + LP LR R EDI 
Sbjct: 265 RFERVGGGDEIEVDIRVVAATNKDLQKEVENGTFREDLYYRLNVVHVALPPLRERREDIP 324

Query: 185 LLAEHFAIRMCRELQLPLFVGFSPNALHQLQAYSWPGNVRELKNVVERAVYQHGLNSQPI 244
           LL  HF  ++ R+  +     F+P A   L  Y WPGN+R+L+NVVER +     ++  +
Sbjct: 325 LLVGHFVEKLARDNGMKPKT-FTPEAHDYLTGYEWPGNIRQLQNVVERCLVLVASDTVGV 383

Query: 245 DQLVFNPFQSSDIVTDESEQVDVRHTTRTDFHLPLDYKAWQQQCDIELLQAALTQAKFNQ 304
           D L   P +  D  +     VD+         + LD     ++ +  L++ AL +A+F Q
Sbjct: 384 DDL---PPEIRDEESQLKSAVDL-------LPVRLDLADTLEKIEAALIRRALVRAEFVQ 433

Query: 305 KHAAQLLGLSYHQFRGMMRKY 325
             AA+LLG+S    +  ++KY
Sbjct: 434 VKAAELLGISKSLLQYKLKKY 454