Pairwise Alignments

Query, 338 a.a., phage shock protein operon transcriptional activator from Vibrio cholerae E7946 ATCC 55056

Subject, 472 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  222 bits (565), Expect = 2e-62
 Identities = 131/326 (40%), Positives = 186/326 (57%), Gaps = 8/326 (2%)

Query: 5   LLGESPAFLAVLDKVSRLAPIDRPVLVIGERGTGKELIAQRLHYLSKRWEQPLVSLNCST 64
           L+GES     + ++++R+AP D  VL+ GE GTGKEL A+ +H  S+R  +PLV++NC+ 
Sbjct: 143 LIGESAPMRRIREQIARVAPTDAWVLITGENGTGKELAARAVHAGSQRATRPLVAVNCAA 202

Query: 65  LSEGLIDSELFGHESGSFTGAKGRHQGRFERAEGGTLFLDELATAPLSVQEKLLRVIEYG 124
           + E LI+SELFGHE G+FTGA+    G+FE A  GTLFLDE+    L  Q K+LR+++  
Sbjct: 203 IPEELIESELFGHEKGAFTGAESARTGKFEMAHRGTLFLDEIGDMSLKTQAKILRILQEQ 262

Query: 125 QYERVGGNQVLNANVRLVCATNANLPQMAQQGTFRADLLDRLAFDVIHLPALRHRPEDIA 184
            +E+VGG + +  +VR+V ATN NL +   QGTFR DL  RL    + LPALR R +DI 
Sbjct: 263 SFEKVGGTRTIRVDVRVVAATNKNLEEQIAQGTFREDLYYRLRVFPLSLPALRERGDDIL 322

Query: 185 LLAEHFAIRMCRELQL-PLFVGFSPNALHQLQAYSWPGNVRELKNVVERAVYQHGLNSQP 243
            L + F +R+CR+    PL   F+ +A   L  Y WPGNVREL+N VER +  H   S  
Sbjct: 323 RLLDAFMLRLCRDHAFAPL--TFTDDAQDVLLRYRWPGNVRELRNFVERMLILHAGESVD 380

Query: 244 IDQL----VFNPFQSSDIVTDESEQVDVRHTTRTDFHLPLDYKAWQQQCDIELLQAALTQ 299
           ++ L    + +   SSD  T  + Q     T  T     LD+KA +   +   L   L +
Sbjct: 381 VEDLPPECLRDLSPSSDSATGTAAQ-SATATCGTGVDGILDFKAARNAFETRFLAEQLQE 439

Query: 300 AKFNQKHAAQLLGLSYHQFRGMMRKY 325
              N    A+ +GL        ++ Y
Sbjct: 440 CGGNVSRLAERIGLERSHLHRKLKGY 465